PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S07404.20

Common Name

JCGZ_24026, LOC105646928

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 389aa MW: 43416.4 Da PI: 5.9963

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S07404.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.7	2.5e-07	166	187	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Jcr4S07404.20 166 FCEICGKGFKRDANLRMHMRAH 187 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.03E-6	161	188	No hit	No description
SMART	SM00355	0.0015	165	187	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.1E-5	165	187	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.967	165	192	IPR007087	Zinc finger, C2H2
Pfam	PF12874	0.0021	166	185	No hit	No description
PROSITE pattern	PS00028	0	167	187	IPR007087	Zinc finger, C2H2
SMART	SM00355	59	215	248	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	17	253	275	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MLNPDQIGRP LMEYSFPVEN GDPRNPLLNL STVQARMDSL QRFLSESVNN NTIISKEHMD 60 IVSCEISTAI HQIIINGAAL LSCSQVVQPP TAVKPDEKLL DLPDLKILTT KPNVLNHNSE 120 KVKSAAAAMV AALESNLKVE EGDECDLDYD IVELDEVELL AEHVHFCEIC GKGFKRDANL 180 RMHMRAHGNQ FKTPEALAKP DKGNEFSAEV KKTRFSCPFL GCNRNKKHKK FRPLKSVICV 240 RNHFKRSHCP KMFSCNRCNK KSFSVVADLK SHLKHCGESK WKCSCGTTFS RKDKLFGHIA 300 LFEGHVPAVI GEDDDRVAKD CLVAMEEDEA EEGIVKGEKD RNCTDDGFFE ELLDGLGSIE 360 GYNLQDVLGS SPCNDWSSGI EEFYGDGHC

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MLNPDQIGRP LMEYSFPVEN GDPRNPLLNL STVQARMDSL QRFLSESVNN NTIISKEHMD  60
IVSCEISTAI HQIIINGAAL LSCSQVVQPP TAVKPDEKLL DLPDLKILTT KPNVLNHNSE  120
KVKSAAAAMV AALESNLKVE EGDECDLDYD IVELDEVELL AEHVHFCEIC GKGFKRDANL  180
RMHMRAHGNQ FKTPEALAKP DKGNEFSAEV KKTRFSCPFL GCNRNKKHKK FRPLKSVICV  240
RNHFKRSHCP KMFSCNRCNK KSFSVVADLK SHLKHCGESK WKCSCGTTFS RKDKLFGHIA  300
LFEGHVPAVI GEDDDRVAKD CLVAMEEDEA EEGIVKGEKD RNCTDDGFFE ELLDGLGSIE  360
GYNLQDVLGS SPCNDWSSGI EEFYGDGHC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088310.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A067LEL5	0.0	A0A067LEL5_JATCU; Uncharacterized protein
STRING	cassava4.1_009526m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6855	31	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	2e-80	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	105646928

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]