PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S07357.10

Common Name

JCGZ_03936, LOC105632424

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

HSF

Protein Properties

Length: 425aa MW: 48458.7 Da PI: 4.6462

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S07357.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.2	1.7e-35	15	105	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl k+ye+++d+ +++++sws++g sfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++ weF++++F +g+++ll++i Jcr4S07357.10 15 FLIKTYEMVDDPLTNSIVSWSHSGCSFVVWNPPEFAQDLLPKYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFIRGQRHLLSNI 101 9**************************************************************999.........*************** PP XXXX CS HSF_DNA-bind 98 krkk 101 +r+k Jcr4S07357.10 102 RRRK 105 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	9.7E-39	7	98	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.5E-62	11	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.58E-35	11	104	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.4E-31	15	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.7E-20	15	38	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.7E-20	53	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	54	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.7E-20	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MDISHGSSSS APAPFLIKTY EMVDDPLTNS IVSWSHSGCS FVVWNPPEFA QDLLPKYFKH 60 NNFSSFVRQL NTYGFRKIDP DQWEFANEEF IRGQRHLLSN IRRRKPIHSH SLQNQNNVTS 120 LTVTEKREFE EKIKKLKHDK SLLQLELKRN ETEKQAYECQ IMSLCERLQS MEKRQIQVIS 180 FLTQLAKKPD FASIIVQQSE YNNKKRRLLE FDHFNDEYNI EENQNLSFPK EDTNGSPAST 240 LNFELVEQLD SSIKCFENFL YGVRETLGED MGNFGSASQP SSVIVRELSA SSLDCETCSL 300 NSMDIASSPE LPACITNLDD SNVQPCFATY EEDCKAASAA VIEEEAVKEP AVEIANTSAQ 360 PGANDHFWEY FLTEAPGSSN TQELEHQPEP GSSDDRTSNE RPWWNANSIN DLTKHMEHLA 420 SAERT

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MDISHGSSSS APAPFLIKTY EMVDDPLTNS IVSWSHSGCS FVVWNPPEFA QDLLPKYFKH  60
NNFSSFVRQL NTYGFRKIDP DQWEFANEEF IRGQRHLLSN IRRRKPIHSH SLQNQNNVTS  120
LTVTEKREFE EKIKKLKHDK SLLQLELKRN ETEKQAYECQ IMSLCERLQS MEKRQIQVIS  180
FLTQLAKKPD FASIIVQQSE YNNKKRRLLE FDHFNDEYNI EENQNLSFPK EDTNGSPAST  240
LNFELVEQLD SSIKCFENFL YGVRETLGED MGNFGSASQP SSVIVRELSA SSLDCETCSL  300
NSMDIASSPE LPACITNLDD SNVQPCFATY EEDCKAASAA VIEEEAVKEP AVEIANTSAQ  360
PGANDHFWEY FLTEAPGSSN TQELEHQPEP GSSDDRTSNE RPWWNANSIN DLTKHMEHLA  420
SAERT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-27	1	104	12	129	Heat shock factor protein 1
5d5v_B	3e-27	1	104	12	129	Heat shock factor protein 1
5d5v_D	3e-27	1	104	12	129	Heat shock factor protein 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012070195.1	0.0	heat stress transcription factor A-4a
TrEMBL	A0A067L5N1	0.0	A0A067L5N1_JATCU; Uncharacterized protein
STRING	XP_002525885.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14100	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	2e-89	heat shock transcription factor A4A

Link Out ? help Back to Top
Entrez Gene	105632424

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]