PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S07242.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 480aa    MW: 54809.7 Da    PI: 7.3853
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S07242.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12.1e-08368417248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +rWTt E  +l+++v ++G g W+ I + +     +Rt  ++k++w+++l
    Jcr4S07242.20 368 QRWTTCEVMKLIEGVSKFGVGKWTHIKKSLFsssSHRTSVNLKDKWRNLL 417
                      8*****************************99****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.017362421IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-12362423IPR009057Homeodomain-like
SMARTSM007172.2E-8366419IPR001005SANT/Myb domain
PfamPF002491.3E-6368417IPR001005SANT/Myb domain
CDDcd116601.55E-20368418No hitNo description
SuperFamilySSF466893.51E-16369436IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MLVTNEKTVI GDFSLHSTCE ETILNTEPVD EVPNLNYSSW EKSCLGGVDL ESNSPHFKER  60
DCHAEMSDLS SSRVMLLEST YDKDPFSLEK MTTQDLCQNQ GELIDGLDHL ECGTTSKVNE  120
GKAVHLTCTA LSGIAPDSTE ILGAQLMSAE KHVKREKLTG CNSLESMSSP VRDVGFCSLG  180
ESNPVDVIVT RQQTHRPTRT CTKRLEQQDS RYQHLNIGAF YKNRRDEFLH VRSHKQHHEK  240
GSGTSQMICQ EECLRGYFCS GSTRTFSPDR TLDKKHIFVY DFVAFLICHL PEDVSHIVLM  300
QIWRLNIHIF LLCIYAVDDF DNCNDEEVSV SNEDFDKETS SADSQDNISK SECVKRRRGL  360
RKKRQRHQRW TTCEVMKLIE GVSKFGVGKW THIKKSLFSS SSHRTSVNLK DKWRNLLKAS  420
SNETQKRRKV EQEQTHASHQ LPDSVWRQVR ELAVIYSYPR KSKSKVSCTS LASSTPSYYC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354363KRRRGLRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020532594.10.0uncharacterized protein LOC105628060 isoform X3
TrEMBLA0A067LIF10.0A0A067LIF1_JATCU; Uncharacterized protein
STRINGcassava4.1_005458m1e-157(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150181313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.12e-21TRF-like 3