PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S07224.10
Common NameJCGZ_03427
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 274aa    MW: 31642.9 Da    PI: 5.1203
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S07224.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-162267148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
    Jcr4S07224.10 22 RGNISDDEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 67
                     78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.527116IPR017930Myb domain
SuperFamilySSF466891.0E-20274IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-11228IPR009057Homeodomain-like
PROSITE profilePS5129426.1571771IPR017930Myb domain
SMARTSM007178.8E-162169IPR001005SANT/Myb domain
PfamPF002492.4E-142267IPR001005SANT/Myb domain
CDDcd001679.32E-112667No hitNo description
Gene3DG3DSA:1.10.10.605.0E-212968IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
LNRCGKSCRL RWLNYLRPNI KRGNISDDEE DLILRLHKLL GNRWSLIAGR LPGRTDNEIK  60
NYWNSHLRKK ISLEKKPESP MPQENSQEKT CDTNQVMQEG ITGAAIPDIS FDVNELFGYS  120
TEGSHGLEWV NKFLELDVED PWLTENSKQT QARCCLPTTP NNLESDTPEL EETLVPMQQK  180
ETKKIAVPDA LRLQALGEQS LLYDQNIESI QINMQVQLRK VEEAQSLQAK KMDDFSQQMK  240
QMMEMMHSLH QGKETLNSAM ENDARLLRFI DTLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2027139108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346770.0KM034677.1 Jatropha curcas clone JcMYB057 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070024.10.0myb-related protein 330 isoform X2
TrEMBLA0A067KUK80.0A0A067KUK8_JATCU; MYB family protein
STRINGcassava4.1_028721m7e-70(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-41myb domain protein 5
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]