PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S06706.10

Common Name

JCGZ_04404, LOC105633763

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 512aa MW: 54339.4 Da PI: 9.4625

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S06706.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Jcr4S06706.10 83 FVCEICNKGFQRDQNLQLHRRGH 105 89*******************88 PP
2	zf-C2H2	15.7	4.2e-05	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Jcr4S06706.10 159 WKCERCSKKYAVQSDWKAHMKTC 181 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.54E-7	82	105	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	82	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	83	105	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	8.2E-5	83	105	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	83	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	124	154	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.4E-5	147	180	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.54E-7	154	180	No hit	No description
SMART	SM00355	77	159	179	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MTRSSRLLGP RNSGKSMVEI ENSSLMTVSN ASGEATSVSS FGNQAALLPV PPPKKKRNLP 60 GMPDPDAEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTSKEPR 120 KRVYVCPEKS CVHHNPARAL GDLTGIKKHF CRKHGEKKWK CERCSKKYAV QSDWKAHMKT 180 CGTREYKCDC GTLFSRRDSF ITHRAFCDAL AEESARAQTL TIIGKEGNTN MKSVVASPPP 240 PPLTPSTTVV SPGLSVQSSE LAENPVGLSA ATPATTCLAA TATSTSSTTS TSNVFASVFA 300 SSAQAAISQP SSTSFSNLLC SFTNTDCPTT IPTPRVIEPP SLSLSSSLYL SNNASLFPEQ 360 DHRHYTPSPQ PAMSATALLQ KAAQMGATTS NASFLRGFGL PVSSSSPGQD SNGNQWDMKP 420 DTHTVAAGLG LGLPSGDVMM ASSQLFVNKP TTLDLLGLGI GAGSAFINSY GGSFNVAAAA 480 ASATPAPYGG RRGCEETWEA ATEKKTNGSA PH

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MTRSSRLLGP RNSGKSMVEI ENSSLMTVSN ASGEATSVSS FGNQAALLPV PPPKKKRNLP  60
GMPDPDAEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTSKEPR  120
KRVYVCPEKS CVHHNPARAL GDLTGIKKHF CRKHGEKKWK CERCSKKYAV QSDWKAHMKT  180
CGTREYKCDC GTLFSRRDSF ITHRAFCDAL AEESARAQTL TIIGKEGNTN MKSVVASPPP  240
PPLTPSTTVV SPGLSVQSSE LAENPVGLSA ATPATTCLAA TATSTSSTTS TSNVFASVFA  300
SSAQAAISQP SSTSFSNLLC SFTNTDCPTT IPTPRVIEPP SLSLSSSLYL SNNASLFPEQ  360
DHRHYTPSPQ PAMSATALLQ KAAQMGATTS NASFLRGFGL PVSSSSPGQD SNGNQWDMKP  420
DTHTVAAGLG LGLPSGDVMM ASSQLFVNKP TTLDLLGLGI GAGSAFINSY GGSFNVAAAA  480
ASATPAPYGG RRGCEETWEA ATEKKTNGSA PH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-37	155	221	3	69	Zinc finger protein JACKDAW
5b3h_F	7e-37	155	221	3	69	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012071807.1	0.0	protein indeterminate-domain 2 isoform X1
Refseq	XP_012071808.1	0.0	protein indeterminate-domain 2 isoform X1
Swissprot	Q9LVQ7	1e-142	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A067L2Z9	0.0	A0A067L2Z9_JATCU; Uncharacterized protein
STRING	cassava4.1_006226m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-109	C2H2-like zinc finger protein

Link Out ? help Back to Top
Entrez Gene	105633763

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]