PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06478.40
Common NameJCGZ_23378, LOC105647578
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 326aa    MW: 37049.5 Da    PI: 5.2842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06478.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26e-13127178155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++++k+L+
  Jcr4S06478.40 127 QRMTHIAVERNRRKQMNEYLSVLRSLMPDS---YVQRGDQASIIGGAINFVKELE 178
                    79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.37E-13125182No hitNo description
Gene3DG3DSA:4.10.280.102.0E-13125182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16126192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-10127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-10132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MALEAVVYQQ DLFGHSTKEF YNLLGGNWSY EFGQLEKEDH HDYNKAAGCF ENFLDNQTEN  60
GLHGDWNNSS SSPPSIMPHL SEMLQINPSS EPNNDSNQLL ESPSTMPARA KRRRSRSRKN  120
KEEIENQRMT HIAVERNRRK QMNEYLSVLR SLMPDSYVQR GDQASIIGGA INFVKELEQR  180
LQLLGGEKQV KEEKSQGEEC PLPFSDFFTF PQYSTTRSDS SVTGVNETMS ATTESSIADI  240
EVTMVESHAN VKIRSKRRPK QLLKIVSGLH SMRLTILHLN VTTLDQIVLY SLSVKVEDDC  300
NLSSVDEIAT AVYEMLGRIQ EEYSVM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127138RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012089103.10.0transcription factor bHLH94
SwissprotQ9C7T44e-81BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A067JU770.0A0A067JU77_JATCU; Uncharacterized protein
STRINGXP_002512342.11e-163(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]