PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S06393.50 | ||||||||
Common Name | JCGZ_11533, LOC105640442 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 388aa MW: 43728.4 Da PI: 8.4373 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 72.1 | 6e-23 | 20 | 85 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+ + +++ l+++a +L v +rRRiYDi+NVLe+++++++k+kn+++wkg Jcr4S06393.50 20 RKQKSLGLLCTNFLSLYDRDGIEVIGLDDAALKL---GV--ERRRIYDIVNVLESVGVLSRKAKNKYTWKG 85 79*****************999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 77.3 | 1.5e-24 | 160 | 240 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL+lltq+f+k++ +s+ + ++l+e+ak L+ + +++k+RR+YDi+NVL++l+liek ++k+++rw g Jcr4S06393.50 160 RKEKSLGLLTQNFVKIFLCSKVNLISLDEAAKLLLGDvhnssIMRTKVRRLYDIANVLSSLKLIEKthtaeTRKPAFRWLG 240 79***************************************999**************************99*******87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.5E-26 | 16 | 86 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.74E-15 | 19 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.5E-27 | 20 | 85 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 8.6E-20 | 21 | 85 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.6E-23 | 158 | 241 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 8.9E-33 | 160 | 240 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.1E-19 | 161 | 240 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.4E-13 | 162 | 241 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 388 aa Download sequence Send to blast |
MPVLPSEGPE SSCRHHTYSR KQKSLGLLCT NFLSLYDRDG IEVIGLDDAA LKLGVERRRI 60 YDIVNVLESV GVLSRKAKNK YTWKGFGAIP NALRELKEEG LRENLSSFDK QQSSNFEKVS 120 DDDNDDEDDW DSNPNIGSQN DNPIPSGIVK STAASRFDNR KEKSLGLLTQ NFVKIFLCSK 180 VNLISLDEAA KLLLGDVHNS SIMRTKVRRL YDIANVLSSL KLIEKTHTAE TRKPAFRWLG 240 LGGKSDSGLA DTLAEPKKRK FGVDVTNICF KRTKDDSSAN WSRCDNLKMH NQIKVEDVVT 300 IADRSNLDQD SQEGSKNYRF GPFAPVTVAK VGSSENKMTQ IHDMESLAST YRPQYHNQAL 360 KELFAHYMEA WKTWYTEVAG KKPIEQIS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 3e-39 | 19 | 232 | 3 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012080146.1 | 0.0 | E2F transcription factor-like E2FE | ||||
Swissprot | Q8LSZ4 | 1e-133 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | A0A067K4U3 | 0.0 | A0A067K4U3_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_009539m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3668 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-136 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 105640442 |
Publications ? help Back to Top | |||
---|---|---|---|
|