PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

HD-ZIP

Protein Properties

Length: 210aa MW: 24364 Da PI: 7.2932

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S06344.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.4	1.4e-19	33	85	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++f++eq++ Le+ Fe++ ++ +++ +LA +lgL+ rqV +WFqNrRa++k Jcr4S06344.30 33 KRRFSDEQIRLLESIFESETKLEPRKKLQLAGELGLQPRQVAIWFQNRRARWK 85 679*************************************************9 PP
2	HD-ZIP_I/II	122.1	2.7e-39	32	123	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq++lLE+ Fe+e+kLep++K +la eLglqprqva+WFqnrRAR+k+kq+E++y+ L+++yd+l++ e+L++e+++L +l++ Jcr4S06344.30 32 NKRRFSDEQIRLLESIFESETKLEPRKKLQLAGELGLQPRQVAIWFQNRRARWKSKQIEQEYKNLRANYDKLASCFESLKNEKQSLLIQLQK 123 79************************************************************************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.68E-19	21	88	IPR009057	Homeodomain-like
SMART	SM00389	3.3E-17	24	91	IPR001356	Homeobox domain
PROSITE profile	PS50071	17.346	27	87	IPR001356	Homeobox domain
Pfam	PF00046	4.8E-17	32	85	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-19	33	94	IPR009057	Homeodomain-like
CDD	cd00086	1.12E-14	34	88	No hit	No description
PRINTS	PR00031	1.1E-5	58	67	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	62	85	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	67	83	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.7E-14	87	128	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSNQIEGRGY SLEEPDASSE TTKKKKKHTT NNKRRFSDEQ IRLLESIFES ETKLEPRKKL 60 QLAGELGLQP RQVAIWFQNR RARWKSKQIE QEYKNLRANY DKLASCFESL KNEKQSLLIQ 120 LQKLNQLLGQ PCEGDRTCKT AIDSDNGNIN SDNEAQQGLD NRVFMCSEMN NSREEYTDGS 180 LASPDQWYSF HSASQFDLSS SSSQWFNFWA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	87	RRARWKSKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088620.1	1e-155	homeobox-leucine zipper protein ATHB-12
Swissprot	P46897	2e-47	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A067JIR4	1e-153	A0A067JIR4_JATCU; Uncharacterized protein
STRING	XP_002515621.1	1e-110	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5635	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	3e-39	homeobox 7

Link Out ? help Back to Top
Entrez Gene	105647219

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]