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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S06207.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | AP2 | ||||||||
Protein Properties | Length: 563aa MW: 60255 Da PI: 6.9173 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.5 | 1.2e-11 | 195 | 251 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Jcr4S06207.10 195 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 251 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 36.1 | 1.6e-11 | 283 | 328 | 7 | 55 |
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 r++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Jcr4S06207.10 283 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 328 899*********988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.2E-9 | 195 | 251 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-15 | 195 | 261 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.95E-20 | 195 | 261 | No hit | No description |
PROSITE profile | PS51032 | 17.477 | 196 | 259 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-12 | 196 | 260 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-23 | 196 | 265 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-6 | 197 | 208 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.502 | 275 | 336 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.42E-21 | 283 | 338 | No hit | No description |
Pfam | PF00847 | 1.3E-6 | 283 | 328 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-26 | 283 | 342 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-15 | 284 | 338 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-15 | 284 | 337 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-6 | 318 | 338 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MNMDSSSHHQ NWLGFSLSNQ HHQHINPSHL CLFEAFTTTT TTSSADRGRA QSQARGEDVT 60 ATGTDLSIFT PTGPKLEDFL GSSTTAPPPP PPQPSLQSQF LAETAAAAAA AAPPPPSMTT 120 DSETCEIYDS ELKSIAACFL RGFSNSSSSS SSTTTTTTTN INQEINIITQ NQPLLAQAAE 180 SAPRKTVDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQSRKGRQG GYDKEEKAAR 240 AYDLAALKYW GPTTTTNFPI SNYQKEIEEM KHMTRQEFVA SLRRHHQHGR WQARIGRVAG 300 NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVKSIANSNL PIGGISGKSK 360 NSSDSTSESK SMDGCKSSAD DRDHLSSASS VTFVSPTANS PLGFTMPVKQ DPSDFWSNIL 420 GCRNTSITTS VSNNTKNETG NNVTFHSFSN PLSQVQPSID VDFNVGSSVN CGNNNGILLN 480 GGGGYYGGVG LSGGGGGGGS GGSNVSSTSS NLIPFAAPVA LNSSSSNYEG SSNYGGWIAQ 540 SIHSLQSAKP NVSIFQTPIF GME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012074046.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-138 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A2C9UMZ0 | 0.0 | A0A2C9UMZ0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_004734m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12562 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-118 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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