PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06130.20
Common NameJCGZ_19776, LOC105643704
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARF
Protein Properties Length: 1137aa    MW: 125531 Da    PI: 6.4711
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06130.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.2e-22149250199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  Jcr4S06130.20 149 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 240
                    99*****************************954.4444.48************************************************..5688 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    ++l+++++r+
  Jcr4S06130.20 241 QQLLLGIRRA 250
                    889****997 PP
2Auxin_resp119.13.6e-39275358183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    aahaa+++s+F+v+YnPras+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Jcr4S06130.20 275 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 358
                    79******************************998669********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.59E-44138278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-41140264IPR015300DNA-binding pseudobarrel domain
CDDcd100172.48E-19148240No hitNo description
PROSITE profilePS5086312.097149251IPR003340B3 DNA binding domain
PfamPF023627.9E-21149250IPR003340B3 DNA binding domain
SMARTSM010191.5E-23149251IPR003340B3 DNA binding domain
PfamPF065071.7E-34275358IPR010525Auxin response factor
PROSITE profilePS5174526.83810251109IPR000270PB1 domain
SuperFamilySSF542771.08E-610381103No hitNo description
PfamPF023096.0E-610731110IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1137 aa     Download sequence    Send to blast
MKSPANGAGA ASAAALNPAE GGGGEKKSIN PELWQACAGP LVSLPAAGTL VVYFPQGHSE  60
QVAVSMKKDI DAQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VPSVRILYEV  120
TDRICLFDKD ALLRSDLALK SNKPQTEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF  180
SMQPPAQEIV ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVLFIRDEK  240
QQLLLGIRRA NRQTTNLSSS VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRASPSEFVI  300
PLAKYYKAVC SNQISLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG  360
WDESTAGERR NRVSIWEIEP VTAPFFICPP PFFRSKRSQA TWNASLGLGV FCLEGDSADL  420
DNLFKKTMPW LGDDMYMKDP HSLPGLSLVQ WMNMQQNPSL ANSLQPNYMQ SLSGSVLQNL  480
PGADLSRQLG LSAQQLPQPN NLQFNAQRLP QQAQQLDQLP KLQSSLNPLG SIIQSQHQLG  540
DITQQPRQNL VTQTIPSSQV QPQNLQPQTL AQNTNILQQQ PSLQSHQLPR NISQNLQQQQ  600
QNQQQHIMGQ NQQQSLLQTQ LPDQVTQHLQ MPDNQIQLQL LQKLQQQQQS LLSQQSVLQQ  660
PSQFSQLQDP QRQFLEASKS FARSMPANQL LEMPQTTPAS LPQSNIIQQQ MTKNGNQTNA  720
RLSHMPQQLK FQQQQPGTLS EMPGHMGLTT SSVVNHSVAN HLSIAGNIIL TSAAGAGLSG  780
ITEEVPSCST SPSTNNCANL VQPMNSRVHQ NTVLGDDAAQ SAATLLSPNA LETMSCSANL  840
VKDLQQKSDV KPSLNIAKNQ SQGFFPPQTY LNGATAQADY LDTSSSTTSV CVSQNDVHLQ  900
QNNSSSYNPQ SMLLRDTSQD GELQADIRNS VPYGTNVESQ LGVPMNSDNV LSEGVIGLGK  960
DLPNNLSSGC MLANCENSKD APSSMVSQSF GVPDMAFNSI DSTINDSSFL NRGPWAPPPQ  1020
FQRMRTYTKV YKRGAVGRSI DITRYSDYDE LKQDLARRFG IEGQLEDRQR IGWKLVYVDH  1080
ENDVLLVGDD PWEEFVNCVR CIKILSPQEV QQMSLDGDFG NSVFPNQACS SSDNGNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1732337945388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084285.10.0auxin response factor 19 isoform X1
TrEMBLA0A067JV560.0A0A067JV56_JATCU; Auxin response factor
STRINGcassava4.1_000610m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]