PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05683.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family CO-like
Protein Properties Length: 367aa    MW: 40774.8 Da    PI: 5.2925
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05683.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88.2e-074674432
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClle 32
                     C+++++++++l C d +  +Ce+C  +
  Jcr4S05683.30 46 LLCDKCNSQPAILRCLDEKLSICENCDWS 74
                   57************************865 PP
2CCT63.75.7e-22311354144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    R++a++RYkeK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ 
  Jcr4S05683.30 311 RDKAKMRYKEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 354
                    899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-8147IPR000315B-box-type zinc finger
CDDcd000211.55E-4347No hitNo description
PROSITE profilePS501198.6174388IPR000315B-box-type zinc finger
CDDcd000210.001954774No hitNo description
SMARTSM003363.24888IPR000315B-box-type zinc finger
PfamPF062038.5E-17311353IPR010402CCT domain
PROSITE profilePS5101714.981311353IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEPLCEFCGV VRAVVYCKSD TARLCLHCDG FVHSANSLSR RHPRSLLCDK CNSQPAILRC  60
LDEKLSICEN CDWSANGCSS LGHNVQALSC YTGRPSLAEF SRIWSSVLEP SIVVPQDPNN  120
INYYGDQTPL LSEDSNMSKD CPNFKDLGIQ EGENLCEGLN MDDVSLNFEN DDEIFESSED  180
QTKYHLEKDY ILMEKNLSVT ESNGHVENAT EVSSSRQQDC ITFQSPPVAG MTGLLPPING  240
SSNCLFMNPN CNININLGFP TGAGQVRSLS LSNITGESSA ADYQDCGLSP VFLPSKSPWE  300
LNLETCSPQA RDKAKMRYKE KKKTRTFGKQ IRYASRKARA DTRKRVKGRF VKAGEAYDYD  360
PLVTGNY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0689022e-44HM068902.1 Glycine max CONSTANS-like zinc finger protein (COL20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072042.10.0putative zinc finger protein CONSTANS-LIKE 11
SwissprotQ9LJ441e-105COL12_ARATH; Zinc finger protein CONSTANS-LIKE 12
TrEMBLA0A067K0T70.0A0A067K0T7_JATCU; Uncharacterized protein
STRINGcassava4.1_024899m1e-175(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70521923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-107B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]