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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Jcr4S05623.10 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 340aa MW: 38398.9 Da PI: 7.4995 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 26.4 | 1.6e-08 | 1 | 24 | 24 | 48 |
HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
W++Ia++++ gRt++++k++w+++l
Jcr4S05623.10 1 WSKIAAKLP-GRTDNEIKNYWHSHL 24
*********.************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 17.817 | 1 | 28 | IPR017930 | Myb domain |
| CDD | cd00167 | 4.87E-5 | 1 | 24 | No hit | No description |
| SuperFamily | SSF46689 | 7.75E-7 | 1 | 32 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 3.0E-6 | 1 | 24 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 5.1E-12 | 1 | 25 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 340 aa Download sequence Send to blast |
WSKIAAKLPG RTDNEIKNYW HSHLKRRAKK SESSNGMKEQ CSTETLCEVS QTRNLKIESY 60 IAKTPYSHPI LESYPLSAEP SSSEVSHLSS ADSCLVTASA TSCNVEDRVS YSFETFEDTS 120 GDFWTQPFVA DQDGYILSVL DGGFTSPSFT SYDDSVDLFY QIGVHACRIA HWDCKWVVGV 180 VLEWLDHLEL ARKREEINHS VAAEGWWWRI GLDDDWDCAI WSRMEQNHCE AVATSSCNTV 240 AREEVRSGWR WRATLLLYLA KDADAAKKRK KRRGREEKEK KKKKRGGGGG GGGSGSVGGV 300 EVQHWWGGEE VRFALEIKRK GVFRWFGLIR SDSGSIQPKS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 266 | 270 | KKRKK |
| 2 | 266 | 272 | KKRKKRR |
| 3 | 268 | 274 | RKKRRGR |
| 4 | 268 | 284 | RKKRRGREEKEKKKKKR |
| 5 | 270 | 284 | KRRGREEKEKKKKKR |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | KM034707 | 0.0 | KM034707.1 Jatropha curcas clone JcMYB087 MYB family protein gene, complete cds. | |||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF31 | 34 | 817 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G06180.1 | 3e-11 | myb domain protein 13 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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