PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S05495.20

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 526aa MW: 57767.2 Da PI: 5.2244

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S05495.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.2	2.5e-30	315	365	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kpr+rWtpeLHe+Fveav++LGG+ekAtPk +l+lm+v++Lt++hvkSHLQ Jcr4S05495.20 315 KPRMRWTPELHECFVEAVNKLGGAEKATPKGVLKLMNVESLTIYHVKSHLQ 365 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.291	312	372	IPR017930	Myb domain
SuperFamily	SSF46689	1.11E-15	313	367	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-27	314	365	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-22	315	367	IPR006447	Myb domain, plants
Pfam	PF00249	7.6E-9	317	367	IPR001005	SANT/Myb domain
Pfam	PF14379	7.9E-23	406	453	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MVVLLVIGQG IIMIKLPLAY MAIVRVLLAG GDEVVCSNLV IDLVKLHWLP DMRVNFCCEV 60 IDKEVTQPYF TATSPIIDFS SIESEGLSPL TSECSLSSRP SPFIRTESQR SQNNLQACTV 120 QPPNYCLKSE TNSPLSPGSH AQQSKSTFQR SSVFCTSLYL SSSSSSETCW QLGNLPFLPP 180 PSTCSQPISA VDSTKSPLLY SEDISNPYIE GHPDAHMHDL LNLSGDPSEG SFHSNCASDN 240 LALTEQLELQ FLSDELDIAI TDHGENPRID EIYETPELNS GIVLTCTQTQ NLASVAPSVD 300 ALSSHPSPGP ASVHKPRMRW TPELHECFVE AVNKLGGAEK ATPKGVLKLM NVESLTIYHV 360 KSHLQDLYFG LMFFPFSSIE KKASCSEDKK ATSSSIELDG RRKGRIQITE ALRMQMEVQK 420 QLHEQLEVQR ALQLRIEEHA RYLQKILEEQ QKAGSALLTP GGLSSPSLTN PYQDSEVPPP 480 SPTVANKHPQ SDEPKNNYSS SVSSSSKKKA TDSSDSEKQA FDKKTV

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MVVLLVIGQG IIMIKLPLAY MAIVRVLLAG GDEVVCSNLV IDLVKLHWLP DMRVNFCCEV  60
IDKEVTQPYF TATSPIIDFS SIESEGLSPL TSECSLSSRP SPFIRTESQR SQNNLQACTV  120
QPPNYCLKSE TNSPLSPGSH AQQSKSTFQR SSVFCTSLYL SSSSSSETCW QLGNLPFLPP  180
PSTCSQPISA VDSTKSPLLY SEDISNPYIE GHPDAHMHDL LNLSGDPSEG SFHSNCASDN  240
LALTEQLELQ FLSDELDIAI TDHGENPRID EIYETPELNS GIVLTCTQTQ NLASVAPSVD  300
ALSSHPSPGP ASVHKPRMRW TPELHECFVE AVNKLGGAEK ATPKGVLKLM NVESLTIYHV  360
KSHLQDLYFG LMFFPFSSIE KKASCSEDKK ATSSSIELDG RRKGRIQITE ALRMQMEVQK  420
QLHEQLEVQR ALQLRIEEHA RYLQKILEEQ QKAGSALLTP GGLSSPSLTN PYQDSEVPPP  480
SPTVANKHPQ SDEPKNNYSS SVSSSSKKKA TDSSDSEKQA FDKKTV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-24	315	365	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-24	315	365	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-24	315	365	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-24	315	365	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-24	315	365	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-24	315	365	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-24	315	365	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-24	315	365	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020539792.1	0.0	LOW QUALITY PROTEIN: myb family transcription factor PHL6
Swissprot	Q949U2	1e-111	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A067JYD5	0.0	A0A067JYD5_JATCU; Uncharacterized protein
STRING	cassava4.1_006556m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13469	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-103	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]