PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05308.30
Common NameJCGZ_21508, LOC105650149
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 273aa    MW: 31212.5 Da    PI: 4.8547
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05308.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-20117167255
            AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrd    + k +r++lg+f+taeeAa a+++a+++++g
  Jcr4S05308.30 117 HYRGVRRRP-WGKYAAEIRDsT--R-KGARVWLGTFDTAEEAALAYDKAALRIRG 167
                    7********.**********32..2.24*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.9E-32116175IPR001471AP2/ERF domain
CDDcd000183.84E-30117175No hitNo description
SMARTSM003801.2E-37117181IPR001471AP2/ERF domain
PROSITE profilePS5103224.052117175IPR001471AP2/ERF domain
PfamPF008475.6E-15117167IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-24117176IPR016177DNA-binding domain
PRINTSPR003672.5E-11118129IPR001471AP2/ERF domain
PRINTSPR003672.5E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MNTQNDHQLL ENVWASFIRG EEEADKKRSE TQEISKSWQE LPGLDGREGS MDVLQRLPSL  60
GRWFSMGAEA WEELLSGLDD DVSRSHDNVQ LSCNFDSSDN KNLKVNAMKV DNVTQRHYRG  120
VRRRPWGKYA AEIRDSTRKG ARVWLGTFDT AEEAALAYDK AALRIRGPKA YLNFPLDTVA  180
KAMGNGYAID HGYKRSSDSS CTFLEGNYEN NNSRTRKRVS RDWESEKSDV ELIIEQPEFK  240
RMFSVEEKIG SDFDVVEFQD LGSDYLESLL SSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-28116176464ATERF1
3gcc_A8e-28116176464ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092418.10.0ethylene-responsive transcription factor ERF098
TrEMBLA0A067JB920.0A0A067JB92_JATCU; Uncharacterized protein
STRINGEOY281131e-105(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.14e-39ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]