PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05283.40
Common NameJCGZ_17701, LOC105644552
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 151aa    MW: 16849.4 Da    PI: 8.8314
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05283.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-192375156
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   ++y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f taeeAa+a+++a+ +++g+
  Jcr4S05283.40 23 TRYRGIRRRP-WGKFAAEIRDPTRNG--ARRWLGTFETAEEAARAYDRAAFAFRGH 75
                   68********.**********98887..*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.77E-292383No hitNo description
PfamPF008479.3E-132375IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-302484IPR001471AP2/ERF domain
PROSITE profilePS5103224.7372482IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-232483IPR016177DNA-binding domain
SMARTSM003803.6E-352489IPR001471AP2/ERF domain
PRINTSPR003679.0E-112536IPR001471AP2/ERF domain
PRINTSPR003679.0E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MEATDQVGNN KNSKKQDRGS AETRYRGIRR RPWGKFAAEI RDPTRNGARR WLGTFETAEE  60
AARAYDRAAF AFRGHLAILN FPNEYQYNSH SSPLPSFASS SSSSSSSAPP ANYGVVGSSG  120
GQEVIEFEYL DNKLLEDLLE TKEVSNNKAH W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-30191349114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085331.11e-108ethylene-responsive transcription factor ERF098
SwissprotQ9LTC54e-45ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A067JUN21e-107A0A067JUN2_JATCU; Uncharacterized protein
STRINGcassava4.1_026612m8e-68(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-31ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]