PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S05066.40 | ||||||||
Common Name | JCGZ_02503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | B3 | ||||||||
Protein Properties | Length: 287aa MW: 33248.9 Da PI: 9.4063 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.1 | 1.7e-18 | 194 | 286 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 fkvl+++++++ g ++p +f+e++++ + +++le+++g++W+v++ + ++ + ++ GWk+F + +Lk+gD+v+F+++++++f l++kvf Jcr4S05066.40 194 FKVLLRPYNFTPGASYVPSSFVERYMKRV--HEEVRLESPDGKRWSVRV--TDNGYGLNFSYGWKSFSNYINLKDGDVVIFQMINSKDFLLKIKVF 285 6999*********************7553..448***************..888888999************************99*********9 PP - CS B3 98 r 98 r Jcr4S05066.40 286 R 286 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.81E-19 | 187 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-19 | 187 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.4E-9 | 193 | 286 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.634 | 193 | 287 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-16 | 194 | 286 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.73E-15 | 194 | 286 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MARQPSDGQR RRPGRPPKEW REGPCQESKA PAVESPPGHH FFRVILQKII EDKKLRIPLR 60 LVNRSVGSAQ LSDMARLCVL MEMNGNFEYK GNSRFNVIIF DPSNSEITEY GKNEEETRHE 120 NQETECDDFG EETKLYQTKG TEIPSTCKND NNKRKVEVFC CLQYRRLSEM KSLSKGSKKA 180 ILAADLFEPT YPAFKVLLRP YNFTPGASYV PSSFVERYMK RVHEEVRLES PDGKRWSVRV 240 TDNGYGLNFS YGWKSFSNYI NLKDGDVVIF QMINSKDFLL KIKVFRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-18 | 178 | 286 | 33 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-18 | 178 | 286 | 33 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020540600.1 | 1e-147 | B3 domain-containing protein LOC_Os12g40080 | ||||
TrEMBL | A0A067JFI4 | 0.0 | A0A067JFI4_JATCU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF26317 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 5e-19 | related to vernalization1 1 |
Publications ? help Back to Top | |||
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