PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05066.40
Common NameJCGZ_02503
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 287aa    MW: 33248.9 Da    PI: 9.4063
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05066.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.7e-18194286298
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    fkvl+++++++ g  ++p +f+e++++    + +++le+++g++W+v++  + ++ +  ++ GWk+F +  +Lk+gD+v+F+++++++f l++kvf
  Jcr4S05066.40 194 FKVLLRPYNFTPGASYVPSSFVERYMKRV--HEEVRLESPDGKRWSVRV--TDNGYGLNFSYGWKSFSNYINLKDGDVVIFQMINSKDFLLKIKVF 285
                    6999*********************7553..448***************..888888999************************99*********9 PP

                    - CS
             B3  98 r 98 
                    r
  Jcr4S05066.40 286 R 286
                    8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.81E-19187283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-19187282IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.4E-9193286IPR003340B3 DNA binding domain
PROSITE profilePS5086313.634193287IPR003340B3 DNA binding domain
PfamPF023621.5E-16194286IPR003340B3 DNA binding domain
CDDcd100179.73E-15194286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MARQPSDGQR RRPGRPPKEW REGPCQESKA PAVESPPGHH FFRVILQKII EDKKLRIPLR  60
LVNRSVGSAQ LSDMARLCVL MEMNGNFEYK GNSRFNVIIF DPSNSEITEY GKNEEETRHE  120
NQETECDDFG EETKLYQTKG TEIPSTCKND NNKRKVEVFC CLQYRRLSEM KSLSKGSKKA  180
ILAADLFEPT YPAFKVLLRP YNFTPGASYV PSSFVERYMK RVHEEVRLES PDGKRWSVRV  240
TDNGYGLNFS YGWKSFSNYI NLKDGDVVIF QMINSKDFLL KIKVFRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1817828633141B3 domain-containing transcription factor VRN1
4i1k_B3e-1817828633141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020540600.11e-147B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A067JFI40.0A0A067JFI4_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2631733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.15e-19related to vernalization1 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]