PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04775.10

Common Name

JCGZ_00202

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Protein Properties

Length: 140aa MW: 15973.5 Da PI: 10.3215

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04775.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40	7.2e-13	29	120	13	97
TT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS B3 13 sgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 +++++ p +f+++ + + e + ++t d++g++W+++l++rk+ + ++ + + Fvk gL++gD v+F+ +++ ++ ++ + Jcr4S04775.10 29 EHQFIAPSDFLKKSavldE-SGELKEKITSFDRDGKKWTFRLSIRKNEKYskpTLTPASCRPFVKHFGLRDGDAVIFYITRNdGAGNIQIRGL 120 45689999*99999952.4456678999********995544444548888*******************998767776666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.5E-11	19	111	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.93E-8	21	118	No hit	No description
SuperFamily	SSF101936	5.89E-9	21	110	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	9.0E-10	29	118	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MAKTKLDPEI KSNSIDILCG KSLKKTDLEH QFIAPSDFLK KSAVLDESGE LKEKITSFDR 60 DGKKWTFRLS IRKNEKYSKP TLTPASCRPF VKHFGLRDGD AVIFYITRND GAGNIQIRGL 120 RKDLAIFGKL IWTEVKRVEN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A067LD31	1e-96	A0A067LD31_JATCU; Uncharacterized protein
STRING	cassava4.1_030218m	2e-37	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15290	3	12

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]