PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04674.30
Common NameJCGZ_06067
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 294aa    MW: 32416.3 Da    PI: 9.9642
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04674.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-20145194356
            AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g+
  Jcr4S04674.30 145 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRGA 194
                    9*******.**********32....25**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.827144201IPR001471AP2/ERF domain
PfamPF008474.2E-14144193IPR001471AP2/ERF domain
SMARTSM003805.4E-32144207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-29144201IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-21145201IPR016177DNA-binding domain
PRINTSPR003671.2E-10145156IPR001471AP2/ERF domain
CDDcd000189.45E-16145202No hitNo description
PRINTSPR003671.2E-10167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MNNQNLLPVP FFSNPETYQL SEKVHFLTET SSFYKPLFAP HYPISSILAH NNYLNQHNCC  60
PVSVDVSVSD SFVPSKKEPD TQTQSLPVLD GIAAVVGQHI LFGTNTSANG KNLETSISQR  120
TGSKTTNHED DGHRKVTGMP MQRSYRGVRK RPWGRWSAEI RDRIGRCRHW LGTFDTAEEA  180
ARAYDAAARR LRGAKARTNF EIPSVLPISS PTSSGSSTEV RKRNSNKGNG GKKCAVVTSV  240
AHLFSDIINT NSVFEGKTNS TVSNNNNAKL ELDLKLGMGF GENGNKRDAP YMVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-17143202161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073423.10.0ethylene-responsive transcription factor ERF084
TrEMBLA0A067KL790.0A0A067KL79_JATCU; Uncharacterized protein
STRINGcassava4.1_023728m1e-115(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.15e-23ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]