PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S04584.10 | ||||||||
Common Name | LOC105642750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NAC | ||||||||
Protein Properties | Length: 154aa MW: 17847 Da PI: 6.5121 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 117.3 | 1.5e-36 | 20 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp+G rF Ptd+elv +yLk+k +g++++ +++++ ++ ++++PwdLp +k+k+++kew+fF+ ++ ++++ +++r + +gyWk tg ++v+ Jcr4S04584.10 20 LPVGWRFGPTDQELVAHYLKRKRRGDPIDGSDIVEVIKFCNYNPWDLPglSKCKSTDKEWFFFFYLREYHNNSGQAKRRAGNGYWKITGDPRSVTP 115 799***************************9989999***********6448899999**8777777766776677777799************99 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++e++g+k+tLvf+ +p+ t Wvmhey+ Jcr4S04584.10 116 EeSDEEIGTKRTLVFH---NPE--ATCWVMHEYEY 145 867788**********...444..79*******85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-39 | 11 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.17 | 20 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-22 | 21 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MTNNSYSAMA NSPPLFAQNL PVGWRFGPTD QELVAHYLKR KRRGDPIDGS DIVEVIKFCN 60 YNPWDLPGLS KCKSTDKEWF FFFYLREYHN NSGQAKRRAG NGYWKITGDP RSVTPEESDE 120 EIGTKRTLVF HNPEATCWVM HEYEYTAELD SPVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-22 | 19 | 143 | 14 | 138 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC775343 | 1e-144 | KC775343.1 Jatropha curcas NAC transcription factor 065 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012083071.1 | 1e-114 | NAC domain-containing protein 45 isoform X1 | ||||
Refseq | XP_020538598.1 | 1e-115 | NAC domain-containing protein 91 isoform X2 | ||||
TrEMBL | R4NEW9 | 1e-113 | R4NEW9_JATCU; NAC transcription factor 065 | ||||
STRING | XP_002515112.1 | 1e-41 | (Ricinus communis) | ||||
STRING | XP_002515119.1 | 3e-44 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17031 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 3e-30 | TCV-interacting protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105642750 |
Publications ? help Back to Top | |||
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