PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S04578.10 | ||||||||
Common Name | LOC105635912 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NAC | ||||||||
Protein Properties | Length: 258aa MW: 30144.8 Da PI: 5.4631 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 129.6 | 2.3e-40 | 4 | 138 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lpp frF Pt+eel+++yL +k+egk+ l +++vi+ +diy+++PwdLp+ ++++ ++w+fF +++++ g r++r t++gyWk+tg+ Jcr4S04578.10 4 LPPEFRFYPTEEELITFYLLNKLEGKRedlnLVMDRVIPVLDIYDFDPWDLPQlsgdLCYKDPEQWFFFNAIQERESCGGRPKRLTSTGYWKSTGS 99 6899***********************7876666678***************656764455778******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s+k++ +g+k+t+vfykgr p+g+kt+W m+ey+ Jcr4S04578.10 100 PGYVYSSKNRCIGVKRTMVFYKGRVPNGRKTEWKMNEYK 138 **************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-44 | 3 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.649 | 4 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-21 | 5 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEDLPPEFRF YPTEEELITF YLLNKLEGKR EDLNLVMDRV IPVLDIYDFD PWDLPQLSGD 60 LCYKDPEQWF FFNAIQERES CGGRPKRLTS TGYWKSTGSP GYVYSSKNRC IGVKRTMVFY 120 KGRVPNGRKT EWKMNEYKAI QRSEASSSST NANPVLRHEY SLCRVYNTSK YRRAFDRRPV 180 GLEISQPRVA EVGGNLTITH QNPPLMGEGR STHESSLLQE YGNSESSNNM VVMPIDNEPI 240 WDWEHLSYWD YDGKYIEI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-31 | 4 | 167 | 17 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-31 | 4 | 167 | 17 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-31 | 4 | 167 | 17 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-31 | 4 | 167 | 17 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-31 | 4 | 167 | 20 | 167 | NAC domain-containing protein 19 |
3swm_B | 2e-31 | 4 | 167 | 20 | 167 | NAC domain-containing protein 19 |
3swm_C | 2e-31 | 4 | 167 | 20 | 167 | NAC domain-containing protein 19 |
3swm_D | 2e-31 | 4 | 167 | 20 | 167 | NAC domain-containing protein 19 |
3swp_A | 2e-31 | 4 | 167 | 20 | 167 | NAC domain-containing protein 19 |
3swp_B | 2e-31 | 4 | 167 | 20 | 167 | NAC domain-containing protein 19 |
3swp_C | 2e-31 | 4 | 167 | 20 | 167 | NAC domain-containing protein 19 |
3swp_D | 2e-31 | 4 | 167 | 20 | 167 | NAC domain-containing protein 19 |
4dul_A | 2e-31 | 4 | 167 | 17 | 164 | NAC domain-containing protein 19 |
4dul_B | 2e-31 | 4 | 167 | 17 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC775318 | 1e-174 | KC775318.1 Jatropha curcas NAC transcription factor 040 gene, complete cds. | |||
GenBank | KC775319 | 1e-174 | KC775319.1 Jatropha curcas NAC transcription factor 041 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012074437.1 | 0.0 | NAC domain-containing protein 90 | ||||
TrEMBL | R4NES7 | 0.0 | R4NES7_JATCU; NAC transcription factor 040 | ||||
STRING | cassava4.1_023875m | 1e-111 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-72 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Entrez Gene | 105635912 |
Publications ? help Back to Top | |||
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