PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S04514.10 | ||||||||
Common Name | JCGZ_24140, LOC105628634 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 234aa MW: 26992.1 Da PI: 6.6105 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.7 | 5.7e-13 | 117 | 162 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ l++ + + +G+g+W++I+r + k R + q+ s+ qky Jcr4S04514.10 117 KPWTEEEHRLFLIGLNTFGKGDWRSISRNVVKSRNPTQVASHAQKY 162 58*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.075 | 15 | 68 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-5 | 16 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.35E-12 | 18 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.674 | 111 | 167 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.93E-16 | 113 | 168 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-14 | 114 | 166 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.0E-9 | 115 | 161 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-9 | 115 | 165 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-10 | 117 | 162 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.86E-8 | 118 | 163 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MYQDNFSTPD LTQSSPPTRW NRYEDKLFEK ALVMFPEDFP DRWQKIAEHV GRSVQEVTEH 60 YEILVHDVYE IDSGRVELPS YADEFFESSW ESPMAASNQI SFGSQTKQGD AERKKGKPWT 120 EEEHRLFLIG LNTFGKGDWR SISRNVVKSR NPTQVASHAQ KYFLRQNSVK KERKRSSIHD 180 ITTVDNNSVA PHIDKNWIAP PGGASVSVLQ EMPLASHLHD QRGSMVYQNY GFPM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-14 | 20 | 81 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012065468.1 | 1e-177 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 5e-54 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A067L5I9 | 1e-175 | A0A067L5I9_JATCU; Uncharacterized protein | ||||
STRING | GLYMA20G24600.1 | 2e-99 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6068 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 3e-81 | MYB family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105628634 |
Publications ? help Back to Top | |||
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