PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04513.20

Common Name

GRAS04, JCGZ_02977, LOC105629983

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 595aa MW: 68172.9 Da PI: 6.4059

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04513.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	351.5	1.3e-107	227	591	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 + L+ cA+a +gd++ a + L+ ++++ sp g +qR a+yf++AL+arl++ +e+ +++n +e+l+a++l++ ++P+ ++s++ + Jcr4S04513.20 227 THLILCAQAAGNGDQKIAYEQLKLIRQNDSPFGHGNQRSAHYFANALEARLTGIKQEIG--------HPTNAAEVLKAYQLYVSICPFRQMSNFYT 314 67999**********************************************433333........4445789****************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N++I + v++++ vHiiDf+is+G+QWp+++ L++Rp+gpp++RiTg++ p++g +e++eetg+rL+++A++l+vpfe+++ +a+++e+++++ Jcr4S04513.20 315 NRTIAKVVDKASSVHIIDFGISYGFQWPCFIYRLSTRPGGPPRIRITGIDFPQPGfrPAERVEETGRRLKRLADRLNVPFEYQA-IAQKWESINYH 409 **************************************************9*************************.7****** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 +L++ ++E +aV+++++l++l+d++ s+++ rd+vL+l+k+++P+++v+ + + n++ F +rf ea+ ++sa+fd++ea++ re+ +r + Er Jcr4S04513.20 410 DLNIGKEEIVAVCCMYRLKNLPDDTISVSKsSRDAVLELIKKINPNIFVHGVLNGSFNAPFFTTRFREAFFHFSAFFDMFEANATREDPQRLVFER 505 ***********************99889************************************************************ PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e++g+++ nv+aceg er+er et+++W+ r ++GF++++l ++ +k ++ + +++++d + v+e+ +++++gW++r + ++SaW+ Jcr4S04513.20 506 EMIGKDVLNVIACEGIERFERPETYKQWQIRNLRMGFEQLQLHQDLMKRVRNIKNNYHKD-FVVDEDGDWFLMGWRGRIIHAISAWK 591 ******************************************************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.662	199	572	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.6E-105	227	591	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence Send to blast
MTGGELGFKS FPVISNPNLE SMNPSLNTPI SNFPSLDLTQ SPDVDKSLYS SEAGDFSQAV 60 LKYINDILME EDLQDKPCML QDSLALQAAE KSLYDVLGQK NLHFDEKSAP TDIISDQVEL 120 ESFPNSYSAD FANLSNSAAE NGRIYCRVEE EGRRKKQYSI STGESEQLEI FDNSFLHKVE 180 RNESLPCPLY DSSKNEESKK LQQNEHSQAP NSRIRRQTNK ETMDLSTHLI LCAQAAGNGD 240 QKIAYEQLKL IRQNDSPFGH GNQRSAHYFA NALEARLTGI KQEIGHPTNA AEVLKAYQLY 300 VSICPFRQMS NFYTNRTIAK VVDKASSVHI IDFGISYGFQ WPCFIYRLST RPGGPPRIRI 360 TGIDFPQPGF RPAERVEETG RRLKRLADRL NVPFEYQAIA QKWESINYHD LNIGKEEIVA 420 VCCMYRLKNL PDDTISVSKS SRDAVLELIK KINPNIFVHG VLNGSFNAPF FTTRFREAFF 480 HFSAFFDMFE ANATREDPQR LVFEREMIGK DVLNVIACEG IERFERPETY KQWQIRNLRM 540 GFEQLQLHQD LMKRVRNIKN NYHKDFVVDE DGDWFLMGWR GRIIHAISAW KASQV

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence Send to blast

MTGGELGFKS FPVISNPNLE SMNPSLNTPI SNFPSLDLTQ SPDVDKSLYS SEAGDFSQAV  60
LKYINDILME EDLQDKPCML QDSLALQAAE KSLYDVLGQK NLHFDEKSAP TDIISDQVEL  120
ESFPNSYSAD FANLSNSAAE NGRIYCRVEE EGRRKKQYSI STGESEQLEI FDNSFLHKVE  180
RNESLPCPLY DSSKNEESKK LQQNEHSQAP NSRIRRQTNK ETMDLSTHLI LCAQAAGNGD  240
QKIAYEQLKL IRQNDSPFGH GNQRSAHYFA NALEARLTGI KQEIGHPTNA AEVLKAYQLY  300
VSICPFRQMS NFYTNRTIAK VVDKASSVHI IDFGISYGFQ WPCFIYRLST RPGGPPRIRI  360
TGIDFPQPGF RPAERVEETG RRLKRLADRL NVPFEYQAIA QKWESINYHD LNIGKEEIVA  420
VCCMYRLKNL PDDTISVSKS SRDAVLELIK KINPNIFVHG VLNGSFNAPF FTTRFREAFF  480
HFSAFFDMFE ANATREDPQR LVFEREMIGK DVLNVIACEG IERFERPETY KQWQIRNLRM  540
GFEQLQLHQD LMKRVRNIKN NYHKDFVVDE DGDWFLMGWR GRIIHAISAW KASQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-47	209	590	1	377	Protein SCARECROW
5b3h_D	2e-47	209	590	1	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405257	0.0	KM405257.1 Jatropha curcas GRAS04 protein (GRAS04) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012067040.1	0.0	scarecrow-like protein 9
TrEMBL	A0A067L1H5	0.0	A0A067L1H5_JATCU; GRAS04 protein
STRING	XP_002533751.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46600.1	1e-143	GRAS family protein

Link Out ? help Back to Top
Entrez Gene	105629983

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]