PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04418.20
Common NameGRAS26, JCGZ_20657, LOC105645873
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 629aa    MW: 70091.3 Da    PI: 5.9258
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04418.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS432.24e-1322476131373
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    lv+lL++c+ea+ s++++ +++++a+l +lasp+g+++ Rl ay+teALa r++r +++++++ pp+e + +  +++ +al+l+++vsPi+kf h+
  Jcr4S04418.20 247 LVSLLTACVEAIGSKNMAVINHCIAKLGDLASPKGKALSRLCAYYTEALALRVTRLWPHIFHITPPREFD-RVDDDSGTALRLLNQVSPIPKFIHF 341
                    6899*****************************************************************8.5678888999*************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    taN+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l++pfef++ v++rled++l+
  Jcr4S04418.20 342 TANEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAEALNLPFEFHP-VVDRLEDVRLW 432
                    *****************************************************....***************************.7********** PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                    +L+vk+gE++a+n+++q+hr+l +    +   +++L l++s+sP++v ++eqea+hn++++ +r++++l+yysa+fds++++l+ +s  rikvE++
  Jcr4S04418.20 433 MLHVKEGESVAINCIFQMHRTLYDGNGGA--LRDFLGLIRSTSPTIVLMAEQEAEHNAPNLETRVCNSLKYYSAIFDSIDSSLALDSPVRIKVEEM 526
                    **********************6554444..589************************************************************** PP

           GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslv.lgWkdrpLvsvSaW 373
                     ++rei+n+vaceg++r erhe++ekWr+ +e+ GF+ + +s++++ q ++ll++++ + yrv ++  +g++v l W d+pL++vSaW
  Jcr4S04418.20 527 -FAREIRNIVACEGSDRLERHESFEKWRNLMEQGGFRCMGISDREMLQCQMLLKMYSCEDYRVTKQgqDGAAVtLSWLDQPLYTVSAW 613
                    .********************************************************888***96655666666************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.716221591IPR005202Transcription factor GRAS
PfamPF035141.4E-129247613IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MLAGCSSSTL VSPRHRLRSE SPAQFQACHF QLPSMSTQRL DLPCTFSRKE SSRSNPIRPV  60
GVGLSVDKSL ESKTSSCSLK QNIRLPPLAT TSSQSVKDEF WEKGKSLKRF AEQGSVDESC  120
TNRVKRKRGS NDNFEKSDEC GDALSLSQLG SRNFWFQSGF EVPRGLNPSP QAPFSLTCSG  180
DEERVCYVPS EVISPPLPLS NNPWVDSVIT EIADLVGNGS RNPLAQLGTT LEAAEENHQE  240
EYQAFELVSL LTACVEAIGS KNMAVINHCI AKLGDLASPK GKALSRLCAY YTEALALRVT  300
RLWPHIFHIT PPREFDRVDD DSGTALRLLN QVSPIPKFIH FTANEILLRA FEGKDRVHII  360
DFDIKQGLQW PSLFQSLASR TNPPSHVRIT GIGESKQELN ETGDRLAGFA EALNLPFEFH  420
PVVDRLEDVR LWMLHVKEGE SVAINCIFQM HRTLYDGNGG ALRDFLGLIR STSPTIVLMA  480
EQEAEHNAPN LETRVCNSLK YYSAIFDSID SSLALDSPVR IKVEEMFARE IRNIVACEGS  540
DRLERHESFE KWRNLMEQGG FRCMGISDRE MLQCQMLLKM YSCEDYRVTK QGQDGAAVTL  600
SWLDQPLYTV SAWAPVDVAG SSSSFSQPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-7225461526380Protein SCARECROW
5b3h_A2e-7225461525379Protein SCARECROW
5b3h_D2e-7225461525379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052720.0KM405272.1 Jatropha curcas GRAS26 protein (GRAS26) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086993.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A067JND60.0A0A067JND6_JATCU; GRAS26 protein
STRINGXP_002509714.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]