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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Jcr4S04356.10 |
Common Name | JCGZ_13420, LOC105638607 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family |
bHLH |
Protein Properties |
Length: 292aa MW: 32491 Da PI: 6.6292 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Jcr4S04356.10 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 30.7 | 5.8e-10 | 203 | 246 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++ ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq
Jcr4S04356.10 203 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 246
5679*******************5.....5******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 292 aa
Download sequence Send
to blast |
MALAKDRTWA YKFQVEEGET NSFDHIINST NNFAMSHSSS SLGSPSSANS NDFLFHSNNS 60 GISNQTEEAH SLINFAGGFD NFIHANGSLL SFQHNNNNFN YSYKCNSVDP RLSEDINCFQ 120 TATNSNPMTN FGKENIGDWL YCEKTMGTDD DSIIQESGEV QEVNFHKRPN LGENMQALKK 180 QCNSATKKSK ITKPSPSKDP QSIAAKNRRE RISERLKILQ ELVPNGSKVD LVTMLEKAIS 240 YVKFLQLQVK VLATDEFWPV QGGKAPDISQ VKEAIDAILS SQKDRNSSSS SK
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Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Zhang L, et al.
Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] - Kim CM,Dolan L
ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] - Feng Y, et al.
Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]
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