PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04356.10
Common NameJCGZ_13420, LOC105638607
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 292aa    MW: 32491 Da    PI: 6.6292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04356.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.8e-10203246755
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Jcr4S04356.10 203 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 246
                    5679*******************5.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.7E-12196253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-13196255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-11198250No hitNo description
SMARTSM003539.9E-12202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-7204246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MALAKDRTWA YKFQVEEGET NSFDHIINST NNFAMSHSSS SLGSPSSANS NDFLFHSNNS  60
GISNQTEEAH SLINFAGGFD NFIHANGSLL SFQHNNNNFN YSYKCNSVDP RLSEDINCFQ  120
TATNSNPMTN FGKENIGDWL YCEKTMGTDD DSIIQESGEV QEVNFHKRPN LGENMQALKK  180
QCNSATKKSK ITKPSPSKDP QSIAAKNRRE RISERLKILQ ELVPNGSKVD LVTMLEKAIS  240
YVKFLQLQVK VLATDEFWPV QGGKAPDISQ VKEAIDAILS SQKDRNSSSS SK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077828.10.0putative transcription factor bHLH086
SwissprotQ9FJ006e-63BH086_ARATH; Putative transcription factor bHLH086
TrEMBLA0A067KLM10.0A0A067KLM1_JATCU; Uncharacterized protein
STRINGcassava4.1_031371m1e-123(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.11e-59RHD SIX-LIKE 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Kim CM,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
    PLoS Genet., 2016. 12(8): p. e1006211
    [PMID:27494519]
  4. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]