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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Jcr4S04316.30 |
| Common Name | JCGZ_17772 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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| Family |
YABBY |
| Protein Properties |
Length: 216aa MW: 24487.7 Da PI: 6.5031 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Jcr4S04316.30 | genome | Kazusa | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 208.1 | 3.2e-64 | 6 | 170 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesas 93
++f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCtsllsvn+ k s qlla+ sh + ++e+ e v + k+ +++++s++
Jcr4S04316.30 6 HLFDLPEQICYVQCGFCDTILLVSVPCSSLSMVVTVRCGHCTSLLSVNMLKVSfvplQLLASLSH---DQQKEVNPEAAVGLR--KTLDIQRSSSM 96
7899********************************************99888555555555555...444555555444433..33444444455 PP
YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfi.keeiqrikasnPdishreafsaaaknWahfPkihfg 169
s ++l+e+++ p+ +++PPekrqr+Psaynrfi +eei+r+k++nP+++h+eafs+aaknWa fP+ih++
Jcr4S04316.30 97 VAYSDHELEEDKN---PENRVINKPPEKRQRAPSAYNRFInREEIRRLKTENPNMAHKEAFSTAAKNWANFPPIHYK 170
5555545544444...4444689*****************669********************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 216 aa
Download sequence Send
to blast |
MSTLNHLFDL PEQICYVQCG FCDTILLVSV PCSSLSMVVT VRCGHCTSLL SVNMLKVSFV 60
PLQLLASLSH DQQKEVNPEA AVGLRKTLDI QRSSSMVAYS DHELEEDKNP ENRVINKPPE 120
KRQRAPSAYN RFINREEIRR LKTENPNMAH KEAFSTAAKN WANFPPIHYK EGGESCGQED 180
EETTWNCDAA EVNVEGKGFH ERKAPRHSIW ARTPFE
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| Functional Description ? help
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| Source |
Description |
| UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
| Publications
? help Back to Top |
- Zhang L, et al.
Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
PLoS ONE, 2014. 9(5): p. e97878
[PMID:24837971] - Lora J,Hormaza JI,Herrero M
Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
New Phytol., 2015. 208(2): p. 584-95
[PMID:25991552] - Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
BMC Plant Biol., 2016. 16(1): p. 143
[PMID:27350128] - Simon MK,Skinner DJ,Gallagher TL,Gasser CS
Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
Genetics, 2017. 207(4): p. 1489-1500
[PMID:28971961]
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