PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04290.40
Common NameJCGZ_17289
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 250aa    MW: 28212.4 Da    PI: 5.3028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04290.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-20101150255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +++GVr+++ +grW+AeIrdp+    r kr++lg+f+taeeAa  +++a+ kl+g
  Jcr4S04290.40 101 KFRGVRQRP-WGRWAAEIRDPT----RrKRVWLGTFDTAEEAATVYDRAAVKLKG 150
                    89*******.**********84....34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.8E-631249IPR017392AP2/ERF transcription factor ERF/PTI6
SMARTSM003802.7E-39101164IPR001471AP2/ERF domain
PROSITE profilePS5103224.395101158IPR001471AP2/ERF domain
PfamPF008472.8E-13101150IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-23101160IPR016177DNA-binding domain
CDDcd000185.22E-34101160No hitNo description
Gene3DG3DSA:3.30.730.101.7E-31101159IPR001471AP2/ERF domain
PRINTSPR003671.3E-10102113IPR001471AP2/ERF domain
PRINTSPR003671.3E-10124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSVQSETEQV YTNTKRRLVR IILTDPYATD SSSEEEEEKR HENEKPVKEK KFVKKVKRLV  60
TEISYESTRP PVSSTTTATK QEPTKTTTSR SPGSGLTRRN KFRGVRQRPW GRWAAEIRDP  120
TRRKRVWLGT FDTAEEAATV YDRAAVKLKG PNAVTNFPNS VMTGNVVDRQ KDGGSESCDS  180
PTTSIVTSSP TSVLRYDEEL TPFDGFSYGD VDAFGFDIEG LNLEDFMLTA KNFGREEFVD  240
LDDFLVDVIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21102164669ATERF1
3gcc_A4e-21102164669ATERF1
5wx9_A6e-211001671381Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077908.10.0pathogenesis-related genes transcriptional activator PTI6
SwissprotO046822e-52PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A067LBA80.0A0A067LBA8_JATCU; Uncharacterized protein
STRINGEMJ079834e-78(Prunus persica)
STRINGcassava4.1_033707m2e-78(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.12e-31cytokinin response factor 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]