PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04253.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

M-type_MADS

Protein Properties

Length: 97aa MW: 11055 Da PI: 10.328

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04253.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.8	6.8e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+a+i+fs tgkl+ey+s Jcr4S04253.10 9 KKIDNNTARQVTFSKRRRGLFKKAYELSTLCDAEIALIVFSGTGKLFEYAS 59 68***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	30.109	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.4E-40	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.49E-29	2	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-29	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.65E-35	3	62	No hit	No description
Pfam	PF00319	1.1E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-29	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MTRQKIQIKK IDNNTARQVT FSKRRRGLFK KAYELSTLCD AEIALIVFSG TGKLFEYASS 60 RFISLSFSLS CHIFFHFGLL SCDISLFNLG LLISGFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-20	1	84	1	84	MEF2C
5f28_B	1e-20	1	84	1	84	MEF2C
5f28_C	1e-20	1	84	1	84	MEF2C
5f28_D	1e-20	1	84	1	84	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU334633	6e-54	EU334633.1 Euphorbia esula dormancy associated MADS-box protein (DAM1) gene, complete cds.
GenBank	JX966351	6e-54	JX966351.1 Euphorbia esula clone BAC_DAM3 DAM3 (DAM3) gene, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021682197.1	1e-34	MADS-box protein JOINTLESS-like isoform X1
Refseq	XP_021682198.1	1e-34	MADS-box protein JOINTLESS-like isoform X1
Refseq	XP_021682199.1	1e-34	MADS-box protein JOINTLESS-like isoform X1
Refseq	XP_021682200.1	1e-34	MADS-box protein JOINTLESS-like isoform X1
Refseq	XP_021682201.1	8e-35	MADS-box protein JOINTLESS-like isoform X2
Swissprot	Q9FUY6	3e-28	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	A0A067K1G2	3e-33	A0A067K1G2_JATCU; Uncharacterized protein
TrEMBL	A0A2C9V504	4e-33	A0A2C9V504_MANES; Uncharacterized protein
STRING	cassava4.1_020641m	6e-36	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-28	MIKC_MADS family protein

Publications ? help Back to Top
Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985]