PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04166.10

Common Name

JCGZ_10018

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Protein Properties

Length: 375aa MW: 43438.7 Da PI: 9.2742

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04166.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.6	8.2e-12	15	100	3	94
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 k ++ps l+++ l++pkkf+ + g++ s tl+ ++ r W v++ ++ +++ ++ +GW eF + +++g f+ F+++g+s+f+ v Jcr4S04166.10 15 KLMVPS-ILQQKKLRIPKKFVVKKFGQE-LSGFATLTVPDVRMWLVTV--TQIDQKLWFCNGWHEFIEHYSICVGHFLGFRYEGNSNFS--V 100 555555.555556*****99997775.666999*********..********************************99994..4 PP
2	B3	53.7	3.8e-17	274	364	4	98
E-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 vl ps+ k ++ lp fae+h g s ++l+ ++g++W v++ yr+++ + l++GW eF +n+L egD++vF+l ++++ l+v+vf Jcr4S04166.10 274 VLRPSYLYKGYIMHLPSCFAERHlhG----LSGLIKLQLSDGKQWPVRCLYRGGG--TKLSQGWFEFSLENNLGEGDVCVFELLRSRDIVLKVTVF 363 6889999999***********643....45589999999****666655..66*********************99999999999999 PP - CS B3 98 r 98 r Jcr4S04166.10 364 R 364 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.04E-16	12	103	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.377	12	106	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.2E-18	12	103	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	6.7E-7	13	109	IPR003340	B3 DNA binding domain
CDD	cd10017	1.65E-12	13	103	No hit	No description
Pfam	PF02362	4.1E-8	14	101	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.1E-22	267	364	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.04E-22	268	364	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.75E-20	269	364	No hit	No description
SMART	SM01019	9.5E-16	270	366	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.197	271	366	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.4E-15	274	364	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MTDSQVDKCG GQFYKLMVPS ILQQKKLRIP KKFVVKKFGQ ELSGFATLTV PDVRMWLVTV 60 TQIDQKLWFC NGWHEFIEHY SICVGHFLGF RYEGNSNFSV YMFVLMPHKI KDARTVTKPV 120 KDDEKHHVLD EMEAPLLHNA PKHMDWRNVD HKASHRPLGG SFKSQSSDQD SEDVRLQFFV 180 DEENLHSSKN ADLAEKSSKP YESVKKIRKV HRKEQNIDSN DQQPSTHQED EGHMRFGFYR 240 NASARKRSVT AEERERAIIA AKTFELVNPF CRVVLRPSYL YKGYIMHLPS CFAERHLHGL 300 SGLIKLQLSD GKQWPVRCLY RGGGTKLSQG WFEFSLENNL GEGDVCVFEL LRSRDIVLKV 360 TVFRVLESAG RMDRL

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MTDSQVDKCG GQFYKLMVPS ILQQKKLRIP KKFVVKKFGQ ELSGFATLTV PDVRMWLVTV  60
TQIDQKLWFC NGWHEFIEHY SICVGHFLGF RYEGNSNFSV YMFVLMPHKI KDARTVTKPV  120
KDDEKHHVLD EMEAPLLHNA PKHMDWRNVD HKASHRPLGG SFKSQSSDQD SEDVRLQFFV  180
DEENLHSSKN ADLAEKSSKP YESVKKIRKV HRKEQNIDSN DQQPSTHQED EGHMRFGFYR  240
NASARKRSVT AEERERAIIA AKTFELVNPF CRVVLRPSYL YKGYIMHLPS CFAERHLHGL  300
SGLIKLQLSD GKQWPVRCLY RGGGTKLSQG WFEFSLENNL GEGDVCVFEL LRSRDIVLKV  360
TVFRVLESAG RMDRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	1e-65	238	367	16	144	B3 domain-containing transcription factor VRN1
4i1k_B	1e-65	238	367	16	144	B3 domain-containing transcription factor VRN1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020534318.1	0.0	B3 domain-containing transcription factor VRN1, partial
TrEMBL	A0A067LFX3	0.0	A0A067LFX3_JATCU; Uncharacterized protein
STRING	cassava4.1_026568m	1e-128	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2147	34	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	7e-94	B3 family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]