PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04097.30
Common NameJCGZ_17953, LOC105644804
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NF-YC
Protein Properties Length: 97aa    MW: 11116.9 Da    PI: 10.319
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04097.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC543.6e-175941199
          NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivprd 99
                   e++++  + ++P  r+kki+k d+d++++++ea  l+s + elf+  ++ +s   a e+kr+t+k   i +av+r + + dfl+d  p  
  Jcr4S04097.30  5 ENVEKTIRPQFPTGRVKKIVKLDKDINKVTSEAFFLISSSVELFLRFIAEKSTEVAVEKKRKTVKLDHIRTAVKRHQpTSDFLLDSLPFA 94
                   5555666789***************************************************************9976489*****99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.29E-19694IPR009072Histone-fold
PfamPF008085.3E-191477IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.0E-201592IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MAEEENVEKT IRPQFPTGRV KKIVKLDKDI NKVTSEAFFL ISSSVELFLR FIAEKSTEVA  60
VEKKRKTVKL DHIRTAVKRH QPTSDFLLDS LPFANSV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085670.15e-59nuclear transcription factor Y subunit gamma
TrEMBLA0A067K3H31e-57A0A067K3H3_JATCU; Uncharacterized protein
STRINGXP_002514923.14e-48(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-42nuclear factor Y, subunit C13
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]