PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04037.10

Common Name

JCGZ_04192, LOC105632398

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB_related

Protein Properties

Length: 119aa MW: 13637 Da PI: 4.8512

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04037.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.8	2.8e-09	7	52	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +W+ Ed+l+ +a ++ + +W +Ia+ ++ gRt ++k ++ + Jcr4S04037.10 7 SWSRLEDKLFERALVIFPEEspnRWQKIAAQVP-GRTWVEVKKHYED 52 7***************99*********.*********76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.124	1	58	IPR017930	Myb domain
SMART	SM00717	1.5E-10	4	56	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.5E-12	6	60	IPR009057	Homeodomain-like
Pfam	PF00249	8.4E-8	7	53	IPR001005	SANT/Myb domain
CDD	cd00167	2.23E-7	7	54	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.1E-7	7	53	IPR009057	Homeodomain-like
PROSITE profile	PS51294	7.923	105	119	IPR017930	Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MIGNSSSWSR LEDKLFERAL VIFPEESPNR WQKIAAQVPG RTWVEVKKHY EDLVHDVGEI 60 DSGRVQLPSY EDEWGMDSAG GWGSVTESGT SQVWFGSKGK EKETSERRKG VPWTEEEHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	1e-17	3	75	6	78	RADIALIS
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012070162.1	7e-82	transcription factor SRM1
TrEMBL	A0A067KUN7	2e-80	A0A067KUN7_JATCU; Uncharacterized protein
STRING	cassava4.1_016153m	1e-62	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6068	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	4e-30	MYB family protein

Link Out ? help Back to Top
Entrez Gene	105632398

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]