PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03834.10
Common NameJCGZ_05912, LOC105650698
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 262aa    MW: 29810.4 Da    PI: 4.7797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03834.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17105154154
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                    s ykGVr+++ +g++ AeIrdp+    + +r +lg+f+t+e+Aa+a+ +  +++e
  Jcr4S03834.10 105 SIYKGVRRRP-WGKYIAEIRDPV----KgTRLWLGTFDTEEMAAAAYRKKELEFE 154
                    57********.**********75....44******************99988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.0E-326262IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.25E-22105146No hitNo description
PfamPF008474.4E-10105154IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-17105153IPR016177DNA-binding domain
PROSITE profilePS5103218.281106165IPR001471AP2/ERF domain
SMARTSM003801.6E-17106160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-21106152IPR001471AP2/ERF domain
PRINTSPR003671.2E-9107118IPR001471AP2/ERF domain
PRINTSPR003671.2E-9129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MPGLKNPMLD QNLSKIKQNN FISTRKVRII YHDPEATDSS SDEDEELING SSKRLFGNGK  60
RFVREITLST MQYETRIENS CKTKTKSNVY TSTKLGDKRT RMCSSIYKGV RRRPWGKYIA  120
EIRDPVKGTR LWLGTFDTEE MAAAAYRKKE LEFETMMVSQ VVSEESNASS VLFSRPSPSS  180
VLDNGVESSI KQETNMEYND YGDCYSQFSN DFGQFFGGVN DTEYFSVPDC EGLVDFPLSG  240
MIDLPNIELE NLDLLEKALN FT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-131071461555Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012093032.10.0ethylene-responsive transcription factor ERF118
TrEMBLA0A067JBN40.0A0A067JBN4_JATCU; Uncharacterized protein
STRINGcassava4.1_023899m5e-69(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134512027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.27e-24ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]