PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03795.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 627aa    MW: 71686.4 Da    PI: 8.3182
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03795.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.6e-07418459145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE e   + ++++G++ Wkt a+ +g  + + ++k+ w+
    Jcr4S03795.20 418 KRKWTPEEVEFVQKFHEKYGSD-WKTMAEILG--KHRFHVKDTWR 459
                      579*******************.***999998..66777887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.213413462IPR017877Myb-like domain
SMARTSM007170.009417464IPR001005SANT/Myb domain
SuperFamilySSF466892.94E-8418479IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-7420473IPR009057Homeodomain-like
PfamPF139211.4E-10421479No hitNo description
PROSITE profilePS500907.933463532IPR017877Myb-like domain
SMARTSM007170.019467534IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-6470588IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-8474532IPR009057Homeodomain-like
PROSITE profilePS500906.748534587IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MCIVLLHLLV AANDFREGLA VTSQKVRGKF FAYMGTKSVG KKGHEKEKKN NAEEGFCNED  60
KKNKVKDFGV NDNDFEPSDT EIETVNIEGG LNNQEIENKK RQHKDRKSGQ GSANVESQVM  120
EKMDDRHRIS NSENVSEMIN GKEVDQRKTK IKKQKKHKDV VHGHVIKSAT DRKEVENGRD  180
HVYVEDPRKE RKKKKGQHNV NLDSRSTKIT AETVNDESNR IIEDVSSIDL AENQVGDGKV  240
GAHARKAADG KDKKKRKRED IGSVGLINED VGSKSKCLDE NILKKVNHSG KERKKKKKHD  300
GMEGKDGDRE QKMGGGVEDT NSSQKSTPNT AKRVSFSENV EVFPSSDGPS DEETQKDKLV  360
QGKRFSPEED EMVKVAVLNY IDSHGLGEEG NRSGLTLETS FXXXXXXXXX XXXXXXXKRK  420
WTPEEVEFVQ KFHEKYGSDW KTMAEILGKH RFHVKDTWRR IKLKNRKEGR WSQEEYQNLF  480
DLVNKDLRLK ALEEVKKSKH GMLRDNISWT AISDQLGTRT TPTCCLKWYN QLTSPMVAQG  540
EWLDVDDYNL VIALYDLDAC CMEDVDWDSL LEHRSGDLCR KRWSQMVKHI GEHGNKSFAD  600
QVEVLMQRYC PDVLEAREAH NSKPTVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145152QRKTKIKK
2291297ERKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012064753.10.0RNA polymerase I termination factor
TrEMBLA0A067L9S70.0A0A067L9S7_JATCU; Uncharacterized protein
STRINGcassava4.1_002606m1e-163(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-103MYB_related family protein