PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S03621.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

HB-other

Protein Properties

Length: 152aa MW: 17876.1 Da PI: 8.8844

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S03621.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.5	6.1e-10	95	129	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp+++++ LA+++gL+++q+ +WF N+R ++ Jcr4S03621.10 95 KWPYPTEADKIALAESTGLDQKQINNWFINQRKRH 129 679*****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51213	8.905	49	69	IPR005539	ELK domain
SMART	SM01188	0.0059	49	70	IPR005539	ELK domain
PROSITE profile	PS50071	12.811	69	132	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.52E-20	70	143	IPR009057	Homeodomain-like
SMART	SM00389	2.3E-13	71	136	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-28	74	133	IPR009057	Homeodomain-like
CDD	cd00086	5.31E-11	81	133	No hit	No description
Pfam	PF05920	5.8E-18	89	128	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	107	130	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MYLATAFRKF RADPWNHILE NEAAPSSDEE LSGGEVEVPE AQPRSEDRDL KDRLFRRFGS 60 QISTLKLEFS KKKKKGKLPK EARQSLLEWW NVHYKWPYPT EADKIALAES TGLDQKQINN 120 WFINQRKRHW KPSESMQFAV TDNLSGQFFT DD

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269\|PubMed:16798887}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269\|PubMed:11311158, ECO:0000269\|PubMed:16798887}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012085436.1	3e-92	homeobox protein knotted-1-like 6
Swissprot	Q84JS6	7e-64	KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBL	A0A067JUW2	7e-91	A0A067JUW2_JATCU; Uncharacterized protein
STRING	EOY00544	3e-75	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF620	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	1e-47	KNOTTED1-like homeobox gene 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006]