PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S03474.20 | ||||||||
Common Name | JCGZ_05830, LOC105650711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 246aa MW: 26721.7 Da PI: 9.632 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.9 | 9.3e-17 | 43 | 92 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d s ++ r +lg+f++aeeAa a++ a++ l+g Jcr4S03474.20 43 RFLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDSAEEAAMAYDSAARLLRG 92 577******.7*********42...36***********************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.71E-31 | 42 | 99 | No hit | No description |
PROSITE profile | PS51032 | 19.717 | 43 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-34 | 43 | 106 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-27 | 43 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-7 | 44 | 55 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-19 | 44 | 101 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.9E-11 | 46 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-7 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MDKKESSKVD LFQENPLHQA NISDQIKRIR VPPRCNKNGA LKRFLGVRQR PSGRWVAEIK 60 DSSQKLRLWL GTFDSAEEAA MAYDSAARLL RGRNAKTNFV YEKNNGSGII STHQESKLLG 120 KNPRLHQLLQ LAIIKNHARS SSSSSSSSSL ASASDNNDKI PWMGQDFGTM VEDTIICSSS 180 YDQDCYGNSS TSSKICGLSS FGTAKVYSSV IIAPSFSASS SSSSSSSSSP HPLCNQSGDE 240 NKSKEG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-17 | 43 | 109 | 14 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012093045.1 | 1e-159 | pathogenesis-related genes transcriptional activator PTI5 | ||||
TrEMBL | A0A067J8H5 | 1e-158 | A0A067J8H5_JATCU; Uncharacterized protein | ||||
STRING | XP_002512003.1 | 5e-65 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12349 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-17 | related to AP2 11 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 105650711 |
Publications ? help Back to Top | |||
---|---|---|---|
|