PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S03436.10

Common Name

JCGZ_09121, LOC105636337

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 284aa MW: 32040.5 Da PI: 8.3614

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S03436.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Jcr4S03436.10 44 YSCSFCRREFRSAQALGGHMNVH 66 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.53E-6	41	71	No hit	No description
PROSITE profile	PS50157	11.219	44	71	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0098	44	66	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	46	66	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MTSNHHLQKS TNSHPPYEDS WEEQAFAEDA AASLGGCVWP PRSYSCSFCR REFRSAQALG 60 GHMNVHRRDR ARLKQSPGPN NELVNHHHDH QNHHNLFQNQ FSSLGNYQYP SQICTLVYSP 120 NPNSNPSAIN NIASPPSPTR QLNCNNEKNF FPPFSSSCNI KQVDGRKSIP PRSSPPISVT 180 DGYYCKSDPR SKAEKNSRIV GSTECSAKVD CVKTDLSVSL NLVVRRTCPT ITDNNDDDVE 240 GKEAIVRKRR KHNHVQSEVF EISPCFREEL DLELRLGDRP SKVK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	1e-12	39	66	2	29	superman protein
2l1o_A	1e-12	39	66	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074989.1	0.0	zinc finger protein 10
TrEMBL	A0A067KL22	0.0	A0A067KL22_JATCU; Uncharacterized protein
STRING	cassava4.1_033522m	1e-102	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1776	30	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	4e-28	zinc-finger protein 10

Link Out ? help Back to Top
Entrez Gene	105636337

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]