PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03351.20
Common NameJCGZ_10243, LOC105634550
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 402aa    MW: 44713.5 Da    PI: 5.1063
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03351.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.94.3e-32551971128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........t 78 
                    lp+G++F+P+d el+ e+L++k+   +      +  +e+i+++d    i++++P++Lp  +k++ ++++fF+++ ++y+tg+rk+r+         
  Jcr4S03351.20  55 LPAGVKFDPSDAELL-EHLTAKCGVGNskphsfI--DEFIPTLDedkgICYTHPEKLP-GAKKDGSSIHFFHRTINAYSTGQRKRRKihneqgsnE 146
                    799************.999999876664554332..233554444455**********.556778899******************8577766665 PP

            NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                    ++ +W++tgk+k+v++ +g ++g+kk++v+y  +++ +k+ k++Wvmh+y+l
  Jcr4S03351.20 147 EQVRWHKTGKTKSVME-NGVQKGCKKIMVLYrsSKKGSKPDKSNWVMHQYQL 197
                    5899************.999***********5434667778*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-3640216IPR003441NAC domain
PROSITE profilePS5100530.39955216IPR003441NAC domain
PfamPF023651.4E-1356197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MARAWLIDSR TIASKVRNPA RTSAYQIKGY GAHRECPNCH HCIDNSDVSH DWPGLPAGVK  60
FDPSDAELLE HLTAKCGVGN SKPHSFIDEF IPTLDEDKGI CYTHPEKLPG AKKDGSSIHF  120
FHRTINAYST GQRKRRKIHN EQGSNEEQVR WHKTGKTKSV MENGVQKGCK KIMVLYRSSK  180
KGSKPDKSNW VMHQYQLGTE DDEKEGEYVV SKIFYQQQKQ NDNSGDGPVI EDADVLALQA  240
SPRTPNTNPP NPPRPKKSDT CEDVADEKKV VPSSQVEPGI IKKEFEVPVP DVQPEDDDVG  300
YATWLAGESQ AVENSDFSGI DDSLLCKEIL DGSSLLFNSS GLNNVSCTSI ASNTNQLTTR  360
NNDTSYGIAD LENLELDTPP DFQFGDLQFS SQDSILDWLD RI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753710.0KC775371.1 Jatropha curcas NAC transcription factor 093 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072809.10.0SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1
TrEMBLR4NG130.0R4NG13_JATCU; NAC transcription factor 093
STRINGcassava4.1_025371m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.11e-101NAC domain containing protein 44
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]