PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03335.60
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 278aa    MW: 31851.8 Da    PI: 9.4524
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03335.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.2e-107100199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHH.HT--TT-EEEEEE-SSSEE..EE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvka.ngLkegDfvvFkldgrsefelvv 94 
                    ffk+  + ++ ++g l +pkkf++++g++ +++   +l+ + g +W+v+l   k++++  vl++ W +  +    L+ g  +vF+++g+s+f   v
  Jcr4S03335.60   7 FFKIV-HDNAIREGKLGIPKKFIRKYGNDLTSP--AILKVPCGAVWKVEL--LKGDDEvLVLKRVWGRILQKyYSLEYGYLLVFQYMGQSNF--QV 95 
                    55655.778889999***********9886665..999************..5555555*********9987369*************9999..77 PP

                    EEE-S CS
             B3  95 kvfrk 99 
                     +++k
  Jcr4S03335.60  96 VILDK 100
                    77776 PP
2B337.54.3e-121982751698
                    EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    +++p +f +++ +g   +++ ltl+  s rsW+vk+   + +g+   +t GW  F k+n L +gD+++F+l++ + + l+v++fr
  Jcr4S03335.60 198 ICVPISFSRSYvQG---QQVSLTLQV-SDRSWTVKFVK-RAPGKpGRITFGWPVFIKENLLGDGDVCIFELIE-K-KLLKVSIFR 275
                    679999*9999544...445566554.88*******55.44444466999********************997.3.336999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-163101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-153101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.3466101IPR003340B3 DNA binding domain
CDDcd100171.53E-12699No hitNo description
PfamPF023621.4E-87100IPR003340B3 DNA binding domain
SMARTSM010196.3E-77101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-16182275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-15182275IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.433183277IPR003340B3 DNA binding domain
SMARTSM010191.8E-11186277IPR003340B3 DNA binding domain
CDDcd100171.24E-12186275No hitNo description
PfamPF023624.2E-10197275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDKREHFFKI VHDNAIREGK LGIPKKFIRK YGNDLTSPAI LKVPCGAVWK VELLKGDDEV  60
LVLKRVWGRI LQKYYSLEYG YLLVFQYMGQ SNFQVVILDK SAVEIQYPYD RVCAAEPKHD  120
WDFQEAKAQA NEENISVEAL DDQSLKKIRI DSTRDLKQDQ QAKRRSCSST SSALEAVNNF  180
VSENPFFKAV VNTRCPSICV PISFSRSYVQ GQQVSLTLQV SDRSWTVKFV KRAPGKPGRI  240
TFGWPVFIKE NLLGDGDVCI FELIEKKLLK VSIFRCVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079557.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A067KJ351e-130A0A067KJ35_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-30B3 family protein