PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03335.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 345aa    MW: 39548 Da    PI: 8.822
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03335.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.4e-164791899
                   --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                   +p kf++++g+    s  +tl+ +sg +W+v+l   +++++++l+kGW+eF++ + L+ g  +vFk+++   f  +v +f+k
  Jcr4S03335.40  4 IPEKFLRKYGNG--LSSPVTLKVPSGATWQVEL--LNCDDEVWLEKGWQEFAEYHSLQCGHLLVFKYEQPCHF--YVIIFDK 79
                   9********755..5556***************..********************************987888..9999987 PP
2B346.47.3e-15220309295
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                    fk  ++   l+++ +v+p++f +eh   k e+ tl++ d   r W ++l  + +++r + +++GW  F + n Lk gD++vF+l++r+++ lvv+
  Jcr4S03335.40 220 FKSVVNVECLRRCTVVIPNSFSREHFWHKVEDLTLRVAD---RCWHMRLL-NYYDKRlTKFGAGWTAFERGNSLKKGDVCVFELIERKKK-LVVT 309
                    5778889999***************66666776777777...9******4.444444599*************************96444.5665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.9E-8180IPR003340B3 DNA binding domain
PROSITE profilePS5086314.17180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-20380IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-20380IPR015300DNA-binding pseudobarrel domain
CDDcd100177.56E-16478No hitNo description
PfamPF023622.5E-13479IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-16215307IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-15215308IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.603219314IPR003340B3 DNA binding domain
PfamPF023621.2E-11220309IPR003340B3 DNA binding domain
CDDcd100176.00E-14220309No hitNo description
SMARTSM010198.4E-6220314IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MQEIPEKFLR KYGNGLSSPV TLKVPSGATW QVELLNCDDE VWLEKGWQEF AEYHSLQCGH  60
LLVFKYEQPC HFYVIIFDKS ATEIEYPCAR ICTADRNLDE ELKEPKVEEN EDNSSVEILN  120
YPSSNLKRGG ETLRPCPLSP KKMRTVAANK TTDTAVSNHD SPSSGSTIGN PYSSMRDFGG  180
NFNKGLSKEN SFLKAIRGSC PRTSKAHEAA NKYISKYPSF KSVVNVECLR RCTVVIPNSF  240
SREHFWHKVE DLTLRVADRC WHMRLLNYYD KRLTKFGAGW TAFERGNSLK KGDVCVFELI  300
ERKKKLVVTE RENKPVRVAS PSHFNFSKQQ KSALWLWYLY QSGSV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079137.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A067KA420.0A0A067KA42_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-31B3 family protein