PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03314.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 220aa    MW: 25316.8 Da    PI: 9.3333
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03314.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.6e-164811799
                   E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
             B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                   ++pkkfa+++g +   +   +le +sg++W+++l   k+++++++++GW+eF++   L +g ++vF++d++ s f  +v +++k
  Jcr4S03314.30  4 SIPKKFARKYGDN--LPSSTVLEVPSGKKWSIEL--IKSDDEIWFKNGWQEFADFYALATGYMLVFQYDKKnSHF--NVIILDK 81
                   7*********988..555799*************..********************************9865777..8888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.269182IPR003340B3 DNA binding domain
SMARTSM010198.9E-5182IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-20382IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-14481IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-19482IPR015300DNA-binding pseudobarrel domain
CDDcd100177.76E-19480No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MYQSIPKKFA RKYGDNLPSS TVLEVPSGKK WSIELIKSDD EIWFKNGWQE FADFYALATG  60
YMLVFQYDKK NSHFNVIILD KSASEIDYPY NNPEKELQVP KSEEETHIDV SAEILYDLST  120
SQKTRKKSPL SFSQPSKKMK VHHSTSNDKA EKRNAGLFIG PQREDGVMAR KQPLRAEEKA  180
NVLQKAKINF KSENPYFIVA VQPTYLGNRL VHVNFTLLDC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020540839.17e-99B3 domain-containing transcription factor VRN1
TrEMBLA0A067LKV01e-147A0A067LKV0_JATCU; Uncharacterized protein
STRINGcassava4.1_025209m1e-61(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-25B3 family protein