PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02999.50

Common Name

JCGZ_01374

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 184aa MW: 21640.7 Da PI: 9.4362

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02999.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.00029	56	110	2	54
HHHHHHHHHHHHHHHHHH.....HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa.....feeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ rE+ RRdr+N++ f L ++l + + + +K++iL+ A + +++L Jcr4S02999.50 56 SRTKACREKMRRDRLNERhdlcmFMDLYSILEPG---NFQNSNKVAILRYAAHLLNHL 110 578999*********76666689999999997...78999*******9999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.19E-7	50	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-6	57	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MEEVQPSGFC WSPHTVNDKK ETTWCKQYRD VNVMPNSKYS NSAKDKRACL DSSARSRTKA 60 CREKMRRDRL NERHDLCMFM DLYSILEPGN FQNSNKVAIL RYAAHLLNHL RIEAKELKDK 120 NKFLQETIEN LKEEKLELQE ENLMLKAEKK RMENAVESLS IPSSFAPQFS FYPTTTRTRL 180 SRTP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020540039.1	2e-88	uncharacterized protein LOC110010844 isoform X2
TrEMBL	A0A067LKL1	1e-134	A0A067LKL1_JATCU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G54680.1	1e-22	bHLH family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]