 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Jcr4S02989.70 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
| Family |
NF-YC |
| Protein Properties |
Length: 325aa MW: 34943.2 Da PI: 4.6059 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Jcr4S02989.70 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 57 | 4.4e-18 | 20 | 95 | 23 | 98 |
NF-YC 23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
larikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v++ ++fdfl div r
Jcr4S02989.70 20 LARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSALHLKHCVQSYNVFDFLRDIVSR 95
9************************************************************************987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MGQIDYVIFN TGAGMWDQDL ARIKKIMQAD EDVGKIALAV PVLVSKALEL FLQDLCDRTY 60
EITLQRGAKT MSALHLKHCV QSYNVFDFLR DIVSRVPDYG HGHSDHSADH RPLQKRKPIG 120
DECNDSDEES KRSRMHETSH AGSSGRGRGR GRGRGRGRGS RNVERESSHR EIESEPSTAL 180
QQSIKVNSNP GIAVDNGSES KELLMEDAVA SDGANASERN FDLNADVIEN EDSKATAAAS 240
AAAAAAAASA SASASATSPS TSTATATAGA AVIDSSAAVP ATDTNREEYP GWSLSEMDKM 300
PFDPLQLAQL GTRLDEEEED YDEEG
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 147 | 157 | RGRGRGRGRGR |
| 2 | 149 | 158 | RGRGRGRGRG |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KF290463 | 0.0 | KF290463.1 Jatropha curcas clone pJcSSR2604 microsatellite sequence. |
