PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02968.10
Common NameJCGZ_02982, LOC105629958
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 604aa    MW: 66978.5 Da    PI: 9.8266
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02968.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07504553147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
    Jcr4S02968.10 504 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 553
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542365.32E-7308398IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.453499558IPR017930Myb domain
SMARTSM007171.2E-7503556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-10504554IPR009057Homeodomain-like
CDDcd116605.90E-17505555No hitNo description
SuperFamilySSF466891.03E-15505586IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPTP RATRSARYSK ESLHADNDLN LGLASVVATS DCEERFNAEK  60
MVNGKSKNAV GTFPSTIEVG SSSFRGFDDC KREGETKKLV KDEPNKSGKV LNGPAANLCS  120
FEDPVVCDGK STAIVSSDSS TKVPLYGNQI SHCFYPMNGD DVNVDSRDDD ENSSGCTHPN  180
TAKKFFRTAP RIGDRRIRKI LASKYWKVAP RLKDGMLSNT DGGDSKPLYH KRKNYYKYQR  240
SERLYPFKKR KHFGYGSQSN SEEGISSEFV SNSPQKGSAR DAVGSYLKMH GATGASSSVG  300
GQQNSYQPRD SHVKLRIKSF KVPELFIEIP ETATVGLLKR TVMEAVNAIL GGGLCIGVLL  360
QGKKVRDDNK TLVQTGICHN NQLDALGFSL EPNSSRNPPS LHPRDSPFLL PSDTTQPIRR  420
YLPAPNAAHQ ATCATSPEPH GANLGNFIES DHDSAPSPTD MSIDKVTTDS KALVPVPEMN  480
IEALTVVPGH RKSKRSEIVQ RRIRRPFSVS EVEALVQAVE KLGTGRWRDV KLRAFDNAKH  540
RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QELLDRVLTA HAYWSQQQAK QQLKHQQQET  600
CVVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-574885941107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230250KRKNYYKYQRSERLYPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067015.10.0telomere repeat-binding protein 2 isoform X2
SwissprotQ6R0E31e-146TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A067L1I00.0A0A067L1I0_JATCU; Uncharacterized protein
STRINGcassava4.1_002767m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-129TRF-like 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]