PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02872.80 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C3H | ||||||||
Protein Properties | Length: 448aa MW: 48618.1 Da PI: 7.6082 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.1 | 3.6e-09 | 105 | 126 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+++ + G C+yGd+C+F H+ Jcr4S02872.80 105 KVCNYWVQ-GKCSYGDKCRFLHS 126 68******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.376 | 24 | 50 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1 | 24 | 49 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.309 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-7 | 102 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-6 | 103 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-6 | 105 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-7 | 105 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 2.3E-36 | 125 | 340 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 2.2E-6 | 132 | 171 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 1.42E-36 | 133 | 358 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF00400 | 7.0E-5 | 135 | 171 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 13.079 | 139 | 180 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 14.218 | 139 | 180 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 158 | 172 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 24 | 211 | 248 | IPR001680 | WD40 repeat |
SMART | SM00320 | 7.9E-4 | 287 | 324 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.014 | 289 | 323 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 2.3E-36 | 374 | 440 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SuperFamily | SSF50978 | 1.42E-36 | 387 | 440 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 4.5 | 402 | 439 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MDLDAQGGNS RVFQRLGGQS VNDPRHQIVC LHWRAGRCNR FPCPYLHREL PAPPPAGSNG 60 NASKRGFAGD SGFSGRSGTR RSGNFSNSST WGRVGNNKTL RKAEKVCNYW VQGKCSYGDK 120 CRFLHSWSLG ESFALLTSLE GHQKVVTGIA LPSGSDKLYT GSNDETVRVW DCQSGQCMGV 180 VQLGGEVGCM ISEGPWIFVG VPNVVKAWNT QTNTDLSLTG PVGQVYALVV GNDLLFAGTQ 240 DGAILAWKFN AATFNFEPAA SLTGHSVAVV SLVVGANRLY SGSMDHSIRC VQTLTDHTSV 300 VMSVLCWDQF LLSCSLDQTI KVWAATESGN LEVTYTHKEE HMVSDTLTKK ISPVLTWINV 360 VYSEGILHLG LLTLCGMHDF EGKPILLCSC NDNSVHLFDL PSFSERGKIF SKQEIRAIQT 420 GPGGLFFTGD GTGQVRVWKC QVEPTPVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 2e-14 | 129 | 338 | 4 | 215 | Tako8 |
6g6n_A | 2e-14 | 129 | 338 | 4 | 215 | Tako8 |
6g6n_B | 2e-14 | 129 | 338 | 4 | 215 | Tako8 |
6g6n_C | 2e-14 | 129 | 338 | 4 | 215 | Tako8 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012090334.1 | 0.0 | zinc finger CCCH domain-containing protein 48 | ||||
Swissprot | Q9FNZ2 | 0.0 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | A0A067JEM3 | 0.0 | A0A067JEM3_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_021841m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7446 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 0.0 | zinc finger WD40 repeat protein 1 |