PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02843.120
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 276aa    MW: 31297.6 Da    PI: 8.8448
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02843.120genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001999121223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+++++++ +L+ H +  H
  Jcr4S02843.120  99 SCSVCSRVYPTSRLLNIHVSEaH 121
                     6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.637196IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807396IPR007087Zinc finger, C2H2
SMARTSM003552.798121IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100121IPR007087Zinc finger, C2H2
SMARTSM003550.028157182IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280159182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MFKLQGVHLV QFGLNLKISV TEAKRSAMAM VVDIDAKGTL GFPYWTPIAL DLTEDEKHRL  60
QNLVDDDDRE VFCPIVGCGA RLTSLEDFED HYNARHTASC SVCSRVYPTS RLLNIHVSEA  120
HDSFFQAKVA RGYAMAIYAF DSFFLAPWWL ADTMCNYECL VEGCGLKFKN YKSRQQHLVD  180
KHKFPSTFEF FKKTHPSKKA RQKHQRKQAV QKREETSSKM EVEGETIDGL VSAVSRLTTS  240
DSTPSSISFG RRNTHGLTFV PRAIRQESSA QSGTKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070284.11e-160zinc finger protein 511
TrEMBLA0A067LCT11e-159A0A067LCT1_JATCU; Uncharacterized protein
STRINGcassava4.1_014543m1e-122(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.12e-91zinc ion binding;nucleic acid binding;zinc ion binding