PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02805.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 592aa    MW: 66968.2 Da    PI: 7.7415
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02805.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.2e-09376399226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    kt lC  f   G+C+yG++C+FaHg
  Jcr4S02805.10 376 KTQLCEKFKL-GYCSYGSNCTFAHG 399
                    89********.*************8 PP
2zf-CCCH19.51.7e-06442459826
                    GGGGTS--TTTTT-SS-SS CS
        zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                    f++r  +C yGd+C+F H+
  Jcr4S02805.10 442 FYSR-KECTYGDKCRFLHV 459
                    7888.*************7 PP
3zf-CCCH26.61e-08500525227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    k +lC+++   G C+yG  C+FaHg+
  Jcr4S02805.10 500 KKRLCKYWEMKGRCSYGKMCCFAHGQ 525
                    789*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520586.46E-6158267IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:4.10.1000.109.8E-13373405IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-7373404IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5374400IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.798374401IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7376399IPR000571Zinc finger, CCCH-type
SMARTSM003560.42434460IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5435462IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-6436459IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648438461IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4441459IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-11497528IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-7497529IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6498525IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.018498526IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-6500525IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
DVLEMKLLQL EKIHTEENGS VMLTKILSKE KFEYCRLAGV TMMAKVPLEC AGGDLLCGAH  60
SMEEIFGVCP VDVALKELRG PTSSIRADAQ QLHVLRMFEY GGYGARAVLG AGDRGVEVET  120
LAGDDEALVE QLNLEELKID LIKIGKDFLH APNRSLHMND RCFKSICKVN IESCSTLMNL  180
TWLVLAPNLK FLNVVKCTKM EEIVSVQKLG ELTELVESAK LFAKLEFHKL RFLPRLKSIY  240
RSALQFSHLK EIFVRVCPKL KRLPLNSDSG KENKFVIEGE DHWWQALEWE DEATQQALLP  300
CFKPLINIAY TFAQDPDMGF LKLXFPSGFG IIGIQMLESG TQFKNKEHEN FSQNGNPRTD  360
DIFVPNTTMP VINNHKTQLC EKFKLGYCSY GSNCTFAHGN CELRKQLPNL EGPICNDDGL  420
ARTWNCNGDS KRVDQSHMCR MFYSRKECTY GDKCRFLHVT PEKFKRDLGC YRESSAIRIG  480
SIGLSGGHES GIGSSKPWIK KRLCKYWEMK GRCSYGKMCC FAHGQAELEK STGHIELASE  540
VEQTKASKTF LVPGMEFTSR WKALKKLSGI YADWIEDIPL LHNSVNKTEK CI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1880666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-30C3H family protein