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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02785.10 | ||||||||
Common Name | BRC2, JCGZ_18278, LOC105642072 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | TCP | ||||||||
Protein Properties | Length: 452aa MW: 50870.8 Da PI: 8.6725 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 149.6 | 2e-46 | 108 | 252 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasnsss 87 gkkdrhski+T++g+RdRR+Rls+ +a++fFdLqd+LGfdk+skti+WL++++k+aikel+++ ss+s+se+ ++s+ + Jcr4S02785.10 108 SGKKDRHSKIYTAQGPRDRRMRLSLRIARKFFDLQDMLGFDKASKTIDWLFTKSKAAIKELADSvprvkqcnsfSSTSESEVMSGSKTV------- 196 68**************************************************************8887666644333333332222222....... PP TCP 88 g..............kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + + +s k+s+k+++ ++++esr+karararert+ek++ik Jcr4S02785.10 197 TvgengdkkemvlteD--SSFLRLKQSKKPNK--TAFNQESREKARARARERTKEKQKIK 252 1233334467776422..22223333333333..679********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-44 | 109 | 250 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 37.191 | 110 | 168 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.573 | 231 | 248 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MFSSTSNFNP FQYTENPNSL IQEDNSSHFL HFPPAIPFLD DADLLLNEFL SQPHQQEQQV 60 LVCDTNLVAE TAQEVPATNS SKKITQNNKK KKNDIKAPKT LPVARKRSGK KDRHSKIYTA 120 QGPRDRRMRL SLRIARKFFD LQDMLGFDKA SKTIDWLFTK SKAAIKELAD SVPRVKQCNS 180 FSSTSESEVM SGSKTVTVGE NGDKKEMVLT EDSSFLRLKQ SKKPNKTAFN QESREKARAR 240 ARERTKEKQK IKILDKSKQE NPNNLGFTGK MAGEEQEEEE EEKGHDRNYF SQDQVDKFLG 300 LTDAQKSSSI FDLSSRNDVV SNGADFKDEF SCFAGNWEIS NGRGNYGNNR HCAIPNMKLL 360 TTGDFHVQNP NSIFMTTSNS QEQNLTSVIM AATTLNTQEG NPNSVFMNFS ISNKQNPNPI 420 PMAATDAALP SHSLIEDLFC NPKASNNYGN LY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM454466 | 0.0 | KM454466.1 Jatropha curcas TCP transcription factor BRC2 (BRC2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306857.1 | 0.0 | transcription factor TCP12 | ||||
TrEMBL | A0A067JZQ4 | 0.0 | A0A067JZQ4_JATCU; TCP transcription factor BRC2 | ||||
STRING | cassava4.1_025363m | 1e-140 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 4e-30 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Entrez Gene | 105642072 |
Publications ? help Back to Top | |||
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