PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02726.50 | ||||||||
Common Name | JCGZ_24976 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 177aa MW: 19755.4 Da PI: 4.5139 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 129 | 176 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd +l+++++ +G g+W++ ar+ g++Rt+k+c++rw+ ++ Jcr4S02726.50 129 RGPWSVEEDAILINYINIHGEGHWNSAARCAGLKRTGKSCRLRWLRLK 176 89******************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.235 | 124 | 177 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.77E-13 | 127 | 175 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-16 | 128 | 174 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-8 | 128 | 176 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-14 | 129 | 176 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.54E-10 | 131 | 176 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MRFWVFDSDE SSPNSGSTSS STGQSWDDAG NDPRGSSSQS SCNYVGGGSD RVSSESCSSV 60 ANFKKTDDMN GQIRITMSNN QKDQVFLENN NEQDAESCCA SCEREEEEYT DIRKGAWTLE 120 EDAILDFRRG PWSVEEDAIL INYINIHGEG HWNSAARCAG LKRTGKSCRL RWLRLKV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020534037.1 | 1e-128 | uncharacterized protein LOC110009244 | ||||
TrEMBL | A0A067KXU2 | 1e-127 | A0A067KXU2_JATCU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 2e-22 | myb domain protein 78 |
Publications ? help Back to Top | |||
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