PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02679.10
Common NameJCGZ_01499, LOC105649555
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 475aa    MW: 55114 Da    PI: 9.878
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02679.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.9e-15391161799
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
             B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                     +p kf++++gg+   +   +l+ +sg +W+v+l   k++g+++l++GW+eF+k   L  g f+vF++d++   f  +v +++k
  Jcr4S02679.10  39 GIPAKFVRKYGGI--LPSSTVLKVPSGDKWRVEL--IKCDGEIWLKNGWQEFAKFYSLAYGSFLVFQYDKKsCHF--NVIILDK 116
                    59********999..5556999************..********************************9864555..8777776 PP
2B349.67e-16243332599
                    -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
             B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesg....rsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                    + ps+v   ++l +p +f + +           ++ e+g    ++W+v++  +++++++++ l++GW+eF k+n+L++gD++ F+l++ +e +++v
  Jcr4S02679.10 243 MQPSYVYVGSILPIPSHFSKIY-----------FKEEQGkaslNTWSVEYtsTWCNGRKSIRLSNGWREFEKENHLEVGDVCFFELIEPTEMTFKV 327
                    6677777777777887777444...........444444444478999995445999999***************************9899999** PP

                    EEE-S CS
             B3  95 kvfrk 99 
                    ++fr+
  Jcr4S02679.10 328 TIFRH 332
                    **997 PP
3B350.53.9e-16376463190
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    ffk+ ++s++l ++++ lp +f++++ ++k    + +l+  +++ W+v l++  rk+++r ++++GW++F ++n L++gDf++F+l++++ +
  Jcr4S02679.10 376 FFKAVISSSHLDRSNVHLPYNFVSDIHQSKV---KARLQV-ENKWWDVILNIyrRKNRSRGLISAGWRRFSRENFLRVGDFCMFELIDSKPE 463
                    99*********************99965543...445443.55899*999555777888899***********************9975333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-2111117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1912117IPR015300DNA-binding pseudobarrel domain
CDDcd100173.36E-1713115No hitNo description
SMARTSM010196.5E-1015117IPR003340B3 DNA binding domain
PfamPF023627.3E-1339116IPR003340B3 DNA binding domain
PROSITE profilePS5086311.70240117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-21231332IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-20232332IPR015300DNA-binding pseudobarrel domain
CDDcd100174.88E-17237331No hitNo description
SMARTSM010194.0E-8239333IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012239333IPR003340B3 DNA binding domain
PfamPF023623.4E-13242332IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-13370474IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-14373465IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.9E-10376475IPR003340B3 DNA binding domain
PfamPF023622.7E-13376465IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421376475IPR003340B3 DNA binding domain
CDDcd100172.13E-13376473No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MARSLVFEAD STPQFFKIIS QDSIRDGKLV TVLLIVLYGI PAKFVRKYGG ILPSSTVLKV  60
PSGDKWRVEL IKCDGEIWLK NGWQEFAKFY SLAYGSFLVF QYDKKSCHFN VIILDKSATE  120
IEYPYDVSHG DTVQPNGLEK EFQEQKIEVE SESEASVDSL DRFLQSQKRK MKSPLSCPQP  180
PKKMKQEKPT RKNKAKKRNG GLFREEHRSV RVIKRLTSEE KYDALRRANT NFKSENPFFS  240
MAMQPSYVYV GSILPIPSHF SKIYFKEEQG KASLNTWSVE YTSTWCNGRK SIRLSNGWRE  300
FEKENHLEVG DVCFFELIEP TEMTFKVTIF RHAEGSKQQS VGEKSASREK FIRNSSSSNL  360
PVTIESTEEF SSIYPFFKAV ISSSHLDRSN VHLPYNFVSD IHQSKVKARL QVENKWWDVI  420
LNIYRRKNRS RGLISAGWRR FSRENFLRVG DFCMFELIDS KPEMVLMNVT IIRNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1621433425144B3 domain-containing transcription factor VRN1
4i1k_B5e-1621433425144B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180197PKKMKQEKPTRKNKAKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091625.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A067LKX50.0A0A067LKX5_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.13e-19B3 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]