PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02530.20

Common Name

JCGZ_00211, LOC105629635

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

TCP

Protein Properties

Length: 521aa MW: 54154.2 Da PI: 8.2007

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02530.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	85	1.8e-26	169	236	2	73
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d+ktieW + + ++ ++s ++s+ Jcr4S02530.20 169 APAKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGKTIEW----SSGSTLTAPPSKSAPHSFH 236 899**********************************************....5555555555545555333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.5E-22	174	217	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	20.072	175	229	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MELTDMQSNK QNNTVQEPHH HQHHHHHHHH QQLVSFDGRS SGGGPSQGPF MGSISIQAGL 60 SHPSTSHLHH LHQHHHHTLS SPSSSSPTTT TAAAAVAAAV ASAPSTSSSS SSSSSTSTST 120 STSSAAPPHL VDASLAIATR SGPLLDTTKK NQQNLSITAT TTTTAVTPAP AKRSTKDRHT 180 KVDGRGRRIR MPATCAARVF QLTRELGHKS DGKTIEWSSG STLTAPPSKS APHSFHGALA 240 LSHHPHYEEG FAHTSMLGFH HQQQHLMTAD QIAEALPSGG GGGGGETGSG GGGDSNENYA 300 RKRYREDLFK EESQQQQGDS GSGGAGGGGG GGGGGSPIKG FKSSLQLPKP HQQQQQETSA 360 AGLLRPSNLL PATAMWAMAP APSSGSAFWM LPVTTGTGTG TGTSVAGPSE PQMWPFSTAN 420 PSSGNALQAP LHFVPRFNLP GNLEFQGGRG NALQLGSMLM QQQPSQHLGL GMSESNLGML 480 AALNAYSRGS LNMNSEQNNP LDQHQQPQGT NSGDEGPNSS Q

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MELTDMQSNK QNNTVQEPHH HQHHHHHHHH QQLVSFDGRS SGGGPSQGPF MGSISIQAGL  60
SHPSTSHLHH LHQHHHHTLS SPSSSSPTTT TAAAAVAAAV ASAPSTSSSS SSSSSTSTST  120
STSSAAPPHL VDASLAIATR SGPLLDTTKK NQQNLSITAT TTTTAVTPAP AKRSTKDRHT  180
KVDGRGRRIR MPATCAARVF QLTRELGHKS DGKTIEWSSG STLTAPPSKS APHSFHGALA  240
LSHHPHYEEG FAHTSMLGFH HQQQHLMTAD QIAEALPSGG GGGGGETGSG GGGDSNENYA  300
RKRYREDLFK EESQQQQGDS GSGGAGGGGG GGGGGSPIKG FKSSLQLPKP HQQQQQETSA  360
AGLLRPSNLL PATAMWAMAP APSSGSAFWM LPVTTGTGTG TGTSVAGPSE PQMWPFSTAN  420
PSSGNALQAP LHFVPRFNLP GNLEFQGGRG NALQLGSMLM QQQPSQHLGL GMSESNLGML  480
AALNAYSRGS LNMNSEQNNP LDQHQQPQGT NSGDEGPNSS Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	321	335	SGGAGGGGGGGGGGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012066639.1	0.0	transcription factor TCP8
TrEMBL	A0A067LE96	0.0	A0A067LE96_JATCU; Uncharacterized protein
STRING	cassava4.1_034188m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-35	TCP family protein

Link Out ? help Back to Top
Entrez Gene	105629635

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]