PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02339.70 | ||||||||
Common Name | GRAS11, JCGZ_24699, LOC105631672 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | GRAS | ||||||||
Protein Properties | Length: 545aa MW: 61122.1 Da PI: 6.422 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 261.8 | 2.3e-80 | 160 | 537 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++lL cA a+++g+l+++q+lL l+elas++gd+++Rla+y ++AL ++l++ s++ ++++p + ++++ + +l f+evsP++ f + + Jcr4S02339.70 160 EHLLNPCAAAITTGNLSRVQHLLYVLHELASSTGDANHRLAFYGLRALTHHLSS--STTTASIAPISFASTEPKFFQRSLLKFYEVSPWFAFPNNI 253 699**************************************************9..55555676777765666666666666************** PP GRAS 98 aNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefn 179 aN+ Il+ +++e + +Hi+D+++s+G+QWp+Ll+aL+ R++g pp +RiT++ + ++ + rL +fA+++++++++n Jcr4S02339.70 254 ANSSILQVLAKEqdhkRNLHILDIGVSHGVQWPTLLEALTRRSGGlPPLVRITVITATIENdqdtetpflVGPPGDNFSPRLLSFAKSMNINLQIN 349 *********9998877789************************66488******99865556666666666677789999**************** PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns.esFlerflealeyysalfdsle 272 l+ l++l+ + ++ +++E+l+V+ +++l +l +++++er+e+L+++++l+Pk v+++e+++d+ ns ++F+++f++ ++y ++++ds++ Jcr4S02339.70 350 RLHNYPLKNLNAQVIKSNSDETLIVCAQFRLNHLN---HNTPDERTEFLRVLRELEPKGVILSENNTDCscNScGDFATGFSRRVDYLWKFLDSTS 442 *9999*****************************8...77777889*******************96664354259*******************7 PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367 + + + r + Er++++ e+ ++++++g++ +e +ekW er++++GF ++e+a + ++llrk++ ++++r+ee+ +++ l Wk++p+ Jcr4S02339.70 443 SAF----KGRESEERRVMEGEAAKALTNRGEM----NEGKEKWCERMTRVGFVGEMFGEDAIDGGRALLRKYDsNWEMRIEEKGECVGLWWKGHPV 530 775....6677777777777899999999998....9************************************9999******************* PP GRAS 368 vsvSaWr 374 ++S W+ Jcr4S02339.70 531 SFCSLWK 537 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.265 | 133 | 516 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.1E-78 | 160 | 537 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MTIEETEANH ISDHILDWIE DTVPFLPSFL DDPYSSDDIN SYHQWWNQTE ELCQDPINTD 60 TNLTAITITT TNDKLTEESN PTITSSPQPS NSSRKRGSPD DSVQNHQQRK KQSHRAVSNE 120 EKDGGAVVTG KRSNGTKKSN SKSTGNNSNN GNSKEGRWAE HLLNPCAAAI TTGNLSRVQH 180 LLYVLHELAS STGDANHRLA FYGLRALTHH LSSSTTTASI APISFASTEP KFFQRSLLKF 240 YEVSPWFAFP NNIANSSILQ VLAKEQDHKR NLHILDIGVS HGVQWPTLLE ALTRRSGGLP 300 PLVRITVITA TIENDQDTET PFLVGPPGDN FSPRLLSFAK SMNINLQINR LHNYPLKNLN 360 AQVIKSNSDE TLIVCAQFRL NHLNHNTPDE RTEFLRVLRE LEPKGVILSE NNTDCSCNSC 420 GDFATGFSRR VDYLWKFLDS TSSAFKGRES EERRVMEGEA AKALTNRGEM NEGKEKWCER 480 MTRVGFVGEM FGEDAIDGGR ALLRKYDSNW EMRIEEKGEC VGLWWKGHPV SFCSLWKLDV 540 KGNGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 5e-38 | 153 | 537 | 81 | 473 | Protein SHORT-ROOT |
5b3h_B | 3e-38 | 153 | 537 | 27 | 419 | Protein SHORT-ROOT |
5b3h_E | 3e-38 | 153 | 537 | 27 | 419 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM405279 | 0.0 | KM405279.1 Jatropha curcas GRAS11 protein (GRAS11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012069237.1 | 0.0 | nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A067L8A6 | 0.0 | A0A067L8A6_JATCU; GRAS11 protein | ||||
STRING | cassava4.1_033587m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6874 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-160 | GRAS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105631672 |
Publications ? help Back to Top | |||
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